[python] Initial work toward PyTorch data loaders #1
Workflow file for this run
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name: python-tiledbsoma-ml | ||
on: | ||
pull_request: | ||
branches: ["*"] | ||
paths: | ||
- !'**' | ||
- 'other_packages/python/tiledbsoma_ml/**' | ||
push: | ||
branches: [main] | ||
paths: | ||
- !'**' | ||
- 'other_packages/python/tiledbsoma_ml/**' | ||
workflow_dispatch: | ||
jobs: | ||
lint: | ||
runs-on: ubuntu-latest | ||
env: | ||
PYTHON_VERSION: "3.8" | ||
steps: | ||
- uses: actions/checkout@v4 | ||
- uses: actions/setup-python@v5 | ||
with: | ||
python-version: ${{ env.PYTHON_VERSION }} | ||
- name: Restore pre-commit cache | ||
uses: actions/cache@v4 | ||
with: | ||
path: ~/.cache/pre-commit | ||
key: pre-commit-${{ hashFiles('.pre-commit-config.yaml') }} | ||
- name: Install pre-commit | ||
run: pip -v install pre-commit | ||
- name: Run pre-commit hooks on all files | ||
run: pre-commit run -v --files echo `git ls-files other_packages/python/tiledbsoma_ml` | ||
tests: | ||
runs-on: ubuntu-latest | ||
strategy: | ||
fail-fast: false | ||
matrix: | ||
python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"] | ||
steps: | ||
- uses: actions/checkout@v4 | ||
- uses: actions/setup-python@v5 | ||
with: | ||
python-version: ${{ matrix.python-version }} | ||
cache: pip | ||
cache-dependency-path: python-spec/requirements-py${{ matrix.python-version }}.txt | ||
- name: Install prereqs | ||
run: | | ||
pip install --upgrade pip wheel pytest pytest-cov setuptools | ||
pip install . | ||
- name: Run tests | ||
working-directory: ./other_packages/python/tiledbsoma_ml/ | ||
run: | | ||
pytest -s -v tests/ |