python-tiledbsoma-ml.yaml

name: python-tiledbsoma-ml

on:
  pull_request:
    branches: ["*"]
    paths:
      - !'**'
      - 'other_packages/python/tiledbsoma_ml/**'

  push:
    branches: [main]
    paths:
      - !'**'
      - 'other_packages/python/tiledbsoma_ml/**'

  workflow_dispatch:

jobs:
  lint:
    runs-on: ubuntu-latest
    env:
      PYTHON_VERSION: "3.8"
    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        with:
          python-version: ${{ env.PYTHON_VERSION }}

      - name: Restore pre-commit cache
        uses: actions/cache@v4
        with:
          path: ~/.cache/pre-commit
          key: pre-commit-${{ hashFiles('.pre-commit-config.yaml') }}

      - name: Install pre-commit
        run: pip -v install pre-commit

      - name: Run pre-commit hooks on all files
        run: pre-commit run -v --files echo `git ls-files other_packages/python/tiledbsoma_ml`

  tests:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
    steps:
      - uses: actions/checkout@v4

      - uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
          cache: pip
          cache-dependency-path: python-spec/requirements-py${{ matrix.python-version }}.txt

      - name: Install prereqs
        run: |
          pip install --upgrade pip wheel pytest pytest-cov setuptools
          pip install .

      - name: Run tests
        working-directory: ./other_packages/python/tiledbsoma_ml/
        run: |
          pytest -s -v tests/