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add CI
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bkmartinjr committed Aug 25, 2024
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65 changes: 65 additions & 0 deletions .github/workflows/python-tiledbsoma-ml.yaml
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name: python-tiledbsoma-ml

on:
pull_request:
branches: ["*"]
paths:
- !'**'
- 'other_packages/python/tiledbsoma_ml/**'

push:
branches: [main]
paths:
- !'**'
- 'other_packages/python/tiledbsoma_ml/**'

workflow_dispatch:

jobs:
lint:
runs-on: ubuntu-latest
env:
PYTHON_VERSION: "3.8"
steps:
- uses: actions/checkout@v4

- uses: actions/setup-python@v5
with:
python-version: ${{ env.PYTHON_VERSION }}

- name: Restore pre-commit cache
uses: actions/cache@v4
with:
path: ~/.cache/pre-commit
key: pre-commit-${{ hashFiles('.pre-commit-config.yaml') }}

- name: Install pre-commit
run: pip -v install pre-commit

- name: Run pre-commit hooks on all files
run: pre-commit run -v --files echo `git ls-files other_packages/python/tiledbsoma_ml`

tests:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
steps:
- uses: actions/checkout@v4

- uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
cache: pip
cache-dependency-path: python-spec/requirements-py${{ matrix.python-version }}.txt

- name: Install prereqs
run: |
pip install --upgrade pip wheel pytest pytest-cov setuptools
pip install .
- name: Run tests
working-directory: ./other_packages/python/tiledbsoma_ml/
run: |
pytest -s -v tests/

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