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Replace CARO anatomical entity with Uberon #302

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@balhoff balhoff commented Jun 26, 2023

We are replacing CARO with Uberon terms globally (see obophenotype/uberon#2349 and oborel/obo-relations#695 and geneontology/go-ontology#25485).

I have a PR in Minerva to return Uberon 'anatomical entity' as a root type (geneontology/minerva#515). Once that is deployed, Noctua should switch over to using the Uberon term rather than the CARO term (geneontology/noctua#838). We should merge this around the same time.

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kltm commented Jun 26, 2023

@dustine32 If you want to coordinate this with @vanaukenk and roll this out (i.e. dev first then prod), that's good by me. Otherwise, this would wait until when I get back.

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balhoff commented Dec 14, 2023

@vanaukenk I think we should go ahead and merge this. Any reason not to?

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