This release adds several features, including:
- a snakemake pipeline to check the completion status of different pipeline steps and allow resuming partially completed runs
- An interactive terminal menu for wrangling, checking run statistics, and running variant calling
- A plotly choropleth for viewing the prevalences of individual mutations in different regions of select countries
- A much streamlined process for building sif files
- Upgraded versions of underlying packages
For more details, see the documentation on readthedocs