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54 Open 199 Closed
54 Open 199 Closed
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Issues list

Error in testthat due to NA handling in test-17-bedgraph.r when exporting meth.diff as log-transformed value
#331 opened Nov 12, 2024 by alexg9010
2 tasks
1
Extract the most differentially methylated genes
#328 opened Sep 20, 2024 by AlbanZimmer
Issue in unite funtion
#326 opened Aug 27, 2024 by Anjaligarg006
7
how to use the methylation data when to do boxplot ?
#324 opened Aug 8, 2024 by DengEr-1993
4
NA values
#323 opened Jul 9, 2024 by Silvia-Giorgia-Signorini
1
Support for all context all types of methylation data
#322 opened May 22, 2024 by Ge0rges
Typo in vignette
#312 opened Jan 30, 2024 by llrs
Error reading in file improve error message
#302 opened Oct 8, 2023 by Ge0rges
3
methylKit "unite" function error message
#296 opened Aug 18, 2023 by mirurb
@alexg9010
5
add 'chunk' option for getData document
#292 opened Jul 14, 2023 by RJDan
@alexg9010
2
Error during methylkit unite bug
#290 opened Jul 10, 2023 by manjumoorthy95
@alexg9010
1
check for duplicated regions in regioncounts
#288 opened Jun 23, 2023 by alexg9010
@alexg9010
Some feedback and suggestions for Methykit package
#287 opened Jun 15, 2023 by SEvisual
1
nrow on tabix object should print num.records of object enhancement
#281 opened Apr 14, 2023 by alexg9010
@alexg9010
GetCorrelation for methylbaseDB does not accept methods other than 'pearson'
#280 opened Apr 3, 2023 by alexg9010
Unite function output is methylBase object with 1 row
#278 opened Mar 29, 2023 by fafaris39
1
Re-Assignment of Sample Ids fails
#274 opened Jan 13, 2023 by alexg9010
References are not rendered in vignette enhancement
#273 opened Nov 23, 2022 by alexg9010
Verify content of file passed to methRead critical enhancement
#272 opened Oct 26, 2022 by alexg9010
uniting objects with "base" resolution and strand "*" breaks when requesting destranding bug
#271 opened Oct 23, 2022 by alexg9010
1
uniting methylRawDB objects with regional resolution and setting destrand=TRUE deletes the original objects bug critical
#270 opened Oct 23, 2022 by alexg9010
1
segfault when uniting large methylrawlistDB object debug
#269 opened Oct 20, 2022 by ethan-shealy
2
dbdir= argument from tilemethylCounts(), does not work with methylRawListDB data bug
#266 opened Oct 10, 2022 by AnjaCaRa
1
Error in calculateDiffMeth with dispersion=MN bug debug
#265 opened Aug 30, 2022 by alynn1993
1
How to use methyKit with two platform data with different coverage distribution question
#260 opened Jul 7, 2022 by liuyang2006
2
ProTip! What’s not been updated in a month: updated:<2024-10-18.