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58 Open 1,695 Closed
58 Open 1,695 Closed
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Issues list

Error on EasyPQP speclib
#1876 opened Nov 15, 2024 by LKittinun
@guoci
2
MSFragger error: too many peptides were generated, Could not continue. The limit is approximately 2 billion peptides.
#1874 opened Nov 14, 2024 by SamueldelaCamaraFuentes
@fcyu
1
DIA-NN error: Could not read Thermo RAW file
#1873 opened Nov 14, 2024 by cdw0101
@fcyu
3
EasyPQP couldn't import PyOpenMS package speclib
#1872 opened Nov 14, 2024 by JM-Bader
@fcyu
1
Issue with TMT-Integrator for TMTzero with Philosopher
#1870 opened Nov 13, 2024 by FehrAaron
@fcyu
2
100% FDR not possible?
#1869 opened Nov 13, 2024 by 07liesin
@fcyu
3
license issues with conda env when offline
#1867 opened Nov 11, 2024 by eaundhe
@fcyu
6
PTMShepherd "Exception in thread" PTM-Shepherd
#1863 opened Nov 8, 2024 by OLWatUNSW
@dpolasky @danielgeiszler
3
DIA_SpecLib_Quant_Phospho_diaPASEF Sitereport
#1860 opened Nov 3, 2024 by dh2305
@fcyu
7
DIA_spec_diaPASEF DIANN output pg file did not contain protein name
#1831 opened Oct 16, 2024 by singhsk2622
@fcyu
2
Process 'DIA-NN: Propagate information' finished, exit code: 1
#1815 opened Oct 4, 2024 by Shinya-Watanabe
@fcyu
12
Protein coverage calculation
#1810 opened Oct 2, 2024 by apsteinberg
@fcyu @anesvi
5
Combined unique peptides column is missing in combined_proteins.tsv
#1808 opened Oct 2, 2024 by SamueldelaCamaraFuentes
@fcyu
DIA db split option split database
#1793 opened Sep 24, 2024 by liorlobel
@guoci
1
PTM Prophet error crashes run
#1781 opened Sep 13, 2024 by Shinya-Watanabe
@fcyu
14
Issue with MSFragger interface with Koina Server MSBooster
#1775 opened Sep 9, 2024 by BenSamy2020
@yangkl96
22
How to set a modification not C-term?
#1763 opened Aug 31, 2024 by a995752924
@fcyu
3
MSFraggerGlyco to Skyline document enhancement
#1759 opened Aug 29, 2024 by juank1892
@dpolasky
4
Can we get support for crosslinking MS?
#1738 opened Aug 20, 2024 by bluemooninvestor
PTM-Shephard outputs PTM-Shepherd
#1728 opened Aug 14, 2024 by lbeer272
@dpolasky @danielgeiszler
1
BrokenProcessPool split database
#1715 opened Aug 7, 2024 by sarag723
@guoci @fcyu
6
Questions about searching the Pierce iRT peptides.
#1673 opened Jul 15, 2024 by vindr20
@fcyu @yangkl96
18
Got trouble when using two_pass_search of Fragpipe
#1669 opened Jul 10, 2024 by watermelon-virus
@fcyu
3
LFQ-phospho - sequence
#1649 opened Jun 26, 2024 by ghost
@fcyu
2
Summary table-like output for FragPipe enhancement FragPipe
#1641 opened Jun 21, 2024 by carlosg-czbiohub
@fcyu
1
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