v0.11.0

What's Changed

• test: add unit tests for library source inference by @rohank63 in #90
• test: add unit tests for library orientation by @rohank63 in #91
• refactor: pass conf instances, not individual args #92 by @BorisYourich in #95
• refactor: exception handling #94 by @balajtimate in #97
• Infer polyA tail & Conda to Mamba by @BorisYourich in #102
• refactor: wrap long line by @balajtimate in #112
• test: design testing strategy by @balajtimate in #111
• perf: add adapter fragment by @balajtimate in #114
• ci: downgrade Cutadapt & silence warning by @uniqueg in #119
• fix: remove transcript duplicates by @balajtimate in #117
• perf: remove duplicate adapter fragments by @balajtimate in #122
• perf: optimize read layout inference and defaults by @balajtimate in #124
• perf: optimize STAR memory usage and read orientation defaults by @balajtimate in #125
• ci: publish Docker image by @balajtimate in #128
• feat: infer lib type if mate info not in seq IDs by @BorisYourich in #129
• feat: infer additional statistics from read lengths by @balajtimate in #133
• fix: add default to path_2_processed arg by @balajtimate in #137
• Fix bugs by @uniqueg in #141
• Conda-based Dockerfile & new exit status for unexpected errors by @uniqueg in #142
• refactor: avoid duplicate mappings by @BorisYourich in #131
• fix: update Pydantic version by @balajtimate in #146
• feat: set default for records by @balajtimate in #148
• feat: add tax_id parameter by @balajtimate in #147
• fix: add processed sample paths to mapping by @balajtimate in #150
• fix: correctly infer read stats from second mate by @balajtimate in #152
• fix: infer library type relationship by @balajtimate in #157
• feat: improve lib type inference for SRA PE samples by @balajtimate in #161
• refactor: pre-release cleanup by @balajtimate in #162
• build: create data package by @balajtimate in #163
• build: add data dir to MANIFEST.in by @balajtimate in #164

Full Changelog: v0.9.0...v0.10.0

What's Changed

• test: add unit tests for library source inference by @rohank63 in #90
• test: add unit tests for library orientation by @rohank63 in #91
• refactor: pass conf instances, not individual args #92 by @BorisYourich in #95
• refactor: exception handling #94 by @balajtimate in #97
• Infer polyA tail & Conda to Mamba by @BorisYourich in #102
• refactor: wrap long line by @balajtimate in #112
• test: design testing strategy by @balajtimate in #111
• perf: add adapter fragment by @balajtimate in #114
• ci: downgrade Cutadapt & silence warning by @uniqueg in #119
• fix: remove transcript duplicates by @balajtimate in #117
• perf: remove duplicate adapter fragments by @balajtimate in #122
• perf: optimize read layout inference and defaults by @balajtimate in #124
• perf: optimize STAR memory usage and read orientation defaults by @balajtimate in #125
• ci: publish Docker image by @balajtimate in #128
• feat: infer lib type if mate info not in seq IDs by @BorisYourich in #129
• feat: infer additional statistics from read lengths by @balajtimate in #133
• fix: add default to path_2_processed arg by @balajtimate in #137
• Fix bugs by @uniqueg in #141
• Conda-based Dockerfile & new exit status for unexpected errors by @uniqueg in #142
• refactor: avoid duplicate mappings by @BorisYourich in #131
• fix: update Pydantic version by @balajtimate in #146
• feat: set default for records by @balajtimate in #148
• feat: add tax_id parameter by @balajtimate in #147
• fix: add processed sample paths to mapping by @balajtimate in #150
• fix: correctly infer read stats from second mate by @balajtimate in #152
• fix: infer library type relationship by @balajtimate in #157
• feat: improve lib type inference for SRA PE samples by @balajtimate in #161
• refactor: pre-release cleanup by @balajtimate in #162
• build: create data package by @balajtimate in #163
• build: add data dir to MANIFEST.in by @balajtimate in #164

Full Changelog: v0.9.0...v0.11.0