GDAY simulates carbon, nitrogen and water cycling between the plant and the soil. The model is structured into three plant pools (foliage, wood and fine roots), four litter pools (above/below metabolic and structural litter) and three soil organic matter (SOM) pools with varying turnover rates (active, slow and passive).
The model is coded entirely in Python.
1). Comins, H. N. and McMurtrie, R. E. (1993) Long-Term Response of Nutrient-Limited Forests to CO"2 Enrichment; Equilibrium Behavior of Plant-Soil Models. Ecological Applications, 3, 666-681.
The G'DAY model depends on very few non-standard python packages, in fact only one I think??!
- configobj. (Used for reading cfg/ini files)
On the off chance you have a well behaved setup you should only need to do
easy_install configobj
Alternatively follow the simple instructions on the above link. Note, replacing this with a small bit of code to read user input files would be trivial. I might write that...
Once you have downloaded the source code, or clone the repository (go on...) there is a simple makefile, e.g.
sudo make install
or the standard python approach
sudo python setup.py install
I need to add some simple scripts (on the todo list!). But within a python script you would require the following lines...
from gday import gday as model G = model.Gday(cfg_fname, spin_up=True) G.spin_up_pools()
will spin the model up. Spin up expects a met forcing file with a 1000 yrs of data, how you recycle this is up to you. The model automatically stops once the soil, plant and litter pools have reached equilibrium (check code for finer details).
Changing the model default parameters for user defined ones is trivial and utilises a python dictionary, e.g.
from gday import adjust_gday_param_file as ad
replace_dict = { "albedo": "0.123" }
ad.adjust_param_file(cfg_fname, replace_dict)
And finally running the model...
from gday import gday as model G = model.Gday(cfg_fname) G.run_sim()
In all cases cfg_fname is simple a string with a link to the users parameter file, it can be named anything you please.