An open-source platform for developing protein models beyond AlphaFold.

Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)

Run AlphaFold2 (and multimer) step by step

RNA, mRNA, DNA, Peptide, Protein, Antibody and Complex | Folding

This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.

A curated list of awesome protein design research, software and resources.

Screen interactions with AlphaFold Multimer

GUI for running jobs with a local installation of AlphaFold2. Supports submission to queuing systems.

A Tufts Research Technology Workshop detailing how to use AlphaFold 2 on the Tufts HPC cluster

Map AlphaFold PAE values on a model

AlphaFold-wrapper for small HPC

Repo to build AF models of endogeneous ligands

This is a collection of script for analysing Alphafold multimer results during highthroughput screening using Colabfold or similar packages.

RAPSAP is a comprehensive archive of protein structures that pertain specifically to autophagy, aimed at improving structural understanding of the biological process

AI based protein modeling and design