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Implement upload of results #46

Merged
merged 1 commit into from
Oct 28, 2024
Merged

Implement upload of results #46

merged 1 commit into from
Oct 28, 2024

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lkeegan
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@lkeegan lkeegan commented Oct 28, 2024

  • runner creates three folders where the script runs, and uploads their contents as zipfiles:
    • /user_results: provided to user
    • /trusted_user_results: provided to user if they have "full results" enabled by an admin
    • /admin_results: only visible to admins
  • admin results are always uploaded, included for failed runs (for debugging)
  • user results are only provided if the run was successful
  • add PREDICTCR_RUNNER_SCRIPT_DIR env var to docker compose to specify where script & model can be found
  • add /admin/result endpoint to download admin results zipfile
  • switch from micromamba to miniconda docker image
    • reticulate doesn't seem to support micromamba, at least within docker
  • re-enable runner docker image CI
  • update runner README.md
  • resolves results upload #6
  • resolves return error message if run fails #43

Also refactor admin views using tabs

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codecov-commenter commented Oct 28, 2024

Codecov Report

Attention: Patch coverage is 64.00000% with 18 lines in your changes missing coverage. Please review.

Project coverage is 77.88%. Comparing base (4838031) to head (844151e).

Files with missing lines Patch % Lines
backend/src/predicTCR_server/app.py 42.85% 16 Missing ⚠️
backend/src/predicTCR_server/model.py 90.90% 2 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main      #46      +/-   ##
==========================================
- Coverage   78.82%   77.88%   -0.94%     
==========================================
  Files           8        8              
  Lines         680      710      +30     
==========================================
+ Hits          536      553      +17     
- Misses        144      157      +13     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

- runner creates three folders where the script runs, and uploads their contents as zipfiles:
  - `/user_results`: provided to user
  - `/trusted_user_results`: provided to user if they have "full results" enabled by an admin
  - `/admin_results`: only visible to admins
- admin results are always uploaded, included for failed runs (for debugging)
- user results are only provided if the run was successful
- add `PREDICTCR_RUNNER_SCRIPT_DIR` env var to docker compose to specify where script & model can be found
- add /admin/result endpoint to download admin results zipfile
- switch from micromamba to miniconda docker image
  - reticulate doesn't seem to support micromamba, at least within docker
- re-enable runner docker image CI
- update runner README.md
- resolves #6
- resolves #43

Also refactor admin views using tabs
@lkeegan lkeegan merged commit b8b797b into main Oct 28, 2024
5 checks passed
@lkeegan lkeegan deleted the refactor_admin_view branch October 28, 2024 14:55
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return error message if run fails results upload
2 participants