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Add initial notes on possible runner design for scaling the analysis
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lkeegan committed Aug 23, 2024
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# predicTCR Runner

This will be a script or Docker image to do the Python+R analysis.

It needs to

- Regularly poll the predicTCR web service to ask if there is a sample that needs processing
- If one is available
- claim the sample
- download the input files
- run the analysis
- upload the results

Authentification can be done via a long-lived JWT token that admins can request online.

Deployment could be done with a Docker image and a docker-compose config.

Admin would set environment variables to provide

- path to model weights
- JWT token

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