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support more vcf compression formats in Sex guessing tool Tests #195: Commit 3d28c14 pushed by ssadedin
October 22, 2024 08:51 1m 38s master
master
October 22, 2024 08:51 1m 38s
style: Added sdkmanrc Tests #194: Commit 20e1c2e pushed by tommyli
August 27, 2024 08:38 1m 38s mcri/archie
mcri/archie
August 27, 2024 08:38 1m 38s
feat: bumped graxxia Tests #193: Commit 5ede5d3 pushed by tommyli
August 27, 2024 07:58 1m 39s mcri/archie
mcri/archie
August 27, 2024 07:58 1m 39s
add BAM shrinking tool that strips quality scores and read names Tests #192: Commit 87deab7 pushed by ssadedin
August 18, 2024 01:58 1m 41s feat-htsjdk-upgrade-3.x
feat-htsjdk-upgrade-3.x
August 18, 2024 01:58 1m 41s
support exonNumber and strand in gencode genes Tests #191: Commit b0d3fde pushed by ssadedin
July 15, 2024 09:00 1m 40s feat-htsjdk-upgrade-3.x
feat-htsjdk-upgrade-3.x
July 15, 2024 09:00 1m 40s
fix: Upgrade to snakeyaml 2.0 to be compatible with Micronaut 3.9.x a… Tests #190: Commit f9ce3e6 pushed by tommyli
July 15, 2024 03:40 1m 42s mcri/archie
mcri/archie
July 15, 2024 03:40 1m 42s
fix gngsh failure due to security manager error in jdk21 Tests #189: Commit 896ce0e pushed by ssadedin
June 29, 2024 11:50 29s feat-jdk21
feat-jdk21
June 29, 2024 11:50 29s
set gradle properties and update shadow plugin for java 21 Tests #188: Commit fc63f38 pushed by ssadedin
June 29, 2024 11:39 38s feat-jdk21
feat-jdk21
June 29, 2024 11:39 38s
fix type error detected in groovy 3.0.21 Tests #187: Commit f3d8f2f pushed by ssadedin
June 29, 2024 11:36 1m 49s feat-htsjdk-upgrade-3.x
feat-htsjdk-upgrade-3.x
June 29, 2024 11:36 1m 49s
adjust gencode test to reflect slightly different CDS in gencode for … Tests #186: Commit 440ecbb pushed by ssadedin
June 23, 2024 00:04 1m 43s feat-htsjdk-upgrade-3.x
feat-htsjdk-upgrade-3.x
June 23, 2024 00:04 1m 43s
perf opt for loading TSV files based on profiling Tests #185: Commit 0f9b597 pushed by ssadedin
June 22, 2024 22:22 1m 48s feat-htsjdk-upgrade-3.x
feat-htsjdk-upgrade-3.x
June 22, 2024 22:22 1m 48s
bump graxxia for perf improvement in CSV/TSV parser Tests #184: Commit 38c4210 pushed by ssadedin
June 22, 2024 05:56 1m 52s feat-htsjdk-upgrade-3.x
feat-htsjdk-upgrade-3.x
June 22, 2024 05:56 1m 52s
additional features for Gencode support Tests #183: Commit 2ea04a6 pushed by ssadedin
June 21, 2024 22:52 1m 49s feat-htsjdk-upgrade-3.x
feat-htsjdk-upgrade-3.x
June 21, 2024 22:52 1m 49s
feat: shadowJar should also include same exclusion as jar Tests #182: Commit a10f8e5 pushed by tommyli
June 20, 2024 12:20 1m 49s mcri/archie
mcri/archie
June 20, 2024 12:20 1m 49s
feat: Include Allele frequency and result VCF is compliant Tests #181: Commit 0a3d86e pushed by tommyli
June 19, 2024 08:34 1m 42s mcri/archie
mcri/archie
June 19, 2024 08:34 1m 42s
feat: Include Allele frequency and result VCF is compliant Tests #180: Commit 86be346 pushed by tommyli
June 19, 2024 07:37 1m 54s mcri/archie
mcri/archie
June 19, 2024 07:37 1m 54s
feat: Include Allele frequency and result VCF is compliant Tests #179: Commit 5f67288 pushed by tommyli
June 19, 2024 06:29 1m 40s mcri/archie
mcri/archie
June 19, 2024 06:29 1m 40s
attempt to harmonise shadow plugin with htsjdk Tests #178: Commit aa3af43 pushed by ssadedin
June 19, 2024 06:10 1m 39s feat-htsjdk-upgrade-3.x
feat-htsjdk-upgrade-3.x
June 19, 2024 06:10 1m 39s
feat: Include Allele frequency and result VCF is compliant Tests #177: Commit cc553a8 pushed by tommyli
June 19, 2024 03:44 34s mcri/archie
mcri/archie
June 19, 2024 03:44 34s
fix vcf site walker failing on hom-ref calls when walking alleles Tests #176: Commit 79db1db pushed by ssadedin
June 18, 2024 11:27 36s feat-htsjdk-upgrade-3.x
feat-htsjdk-upgrade-3.x
June 18, 2024 11:27 36s
feat: Include Allele frequency and result VCF is compliant Tests #175: Commit bbbef10 pushed by tommyli
June 13, 2024 01:23 2m 8s mcri/archie
mcri/archie
June 13, 2024 01:23 2m 8s
include test id in sample info Tests #174: Commit 3a43ba8 pushed by ssadedin
May 26, 2024 23:09 41s feat-htsjdk-upgrade-3.x
feat-htsjdk-upgrade-3.x
May 26, 2024 23:09 41s
tidy up whitespace Tests #173: Commit 5505f95 pushed by ssadedin
May 7, 2024 22:50 32s feat-htsjdk-upgrade-3.x
feat-htsjdk-upgrade-3.x
May 7, 2024 22:50 32s
minor comment typo Tests #172: Commit f59d8fd pushed by ssadedin
May 7, 2024 22:49 34s feat-htsjdk-upgrade-3.x
feat-htsjdk-upgrade-3.x
May 7, 2024 22:49 34s
add tool for extracting secondary alignment segments Tests #171: Commit 37997ff pushed by ssadedin
May 7, 2024 22:48 36s feat-htsjdk-upgrade-3.x
feat-htsjdk-upgrade-3.x
May 7, 2024 22:48 36s