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[bot] binoc/update-2021-06-06 (#385)
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* Automated deployment to update containers 2021-06-06
* Limit container to just ubuntu to avoid commit tags

Co-authored-by: github-actions <[email protected]>
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github-actions[bot] and github-actions authored Jun 7, 2021
1 parent 8731bae commit f34149b
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5 changes: 3 additions & 2 deletions registry/adminer/container.yaml
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Expand Up @@ -3,7 +3,8 @@ url: https://hub.docker.com/_/adminer
maintainer: '@vsoch'
description: Database management in a single PHP file.
latest:
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latest: sha256:c4619fbc342c8848c2b99758c42cf0030faed8c90c6ea7e2ba8a0c147ca4c2ec
10 changes: 5 additions & 5 deletions registry/consul/container.yaml
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Expand Up @@ -4,11 +4,11 @@ maintainer: '@vsoch'
description: Consul is a datacenter runtime that provides service discovery, configuration,
and orchestration.
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aliases:
consul: /bin/consul
3 changes: 2 additions & 1 deletion registry/elasticsearch/container.yaml
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Expand Up @@ -4,10 +4,11 @@ maintainer: '@vsoch'
description: Elasticsearch is a powerful open source search and analytics engine that
makes data easy to explore.
latest:
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elasticsearch-certgen: /usr/share/elasticsearch/bin/elasticsearch-certgen
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/abi-dumper/container.yaml
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Expand Up @@ -4,9 +4,9 @@ maintainer: '@vsoch'
description: ABI Dumper is a tool for dumping ABI information of an ELF object containing
DWARF debug info.
latest:
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aliases:
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/abyss/container.yaml
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Expand Up @@ -4,11 +4,11 @@ maintainer: '@vsoch'
description: ABySS is a de novo, parallel, paired-end sequence assembler that is designed
for short reads.
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abyss-bloom: /opt/view/bin/abyss-bloom
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/accumulo/container.yaml
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Expand Up @@ -4,7 +4,7 @@ maintainer: '@vsoch'
description: Apache Accumulo is a sorted, distributed key/value store that provides
robust, scalable data storage and retrieval.
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/addrwatch/container.yaml
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Expand Up @@ -4,10 +4,10 @@ maintainer: '@vsoch'
description: addrwatch is a similar software to arpwatch. It main purpose is to monitor
network and log ethernet/ip pairings.
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aliases:
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addrwatch_stdout: /opt/view/bin/addrwatch_stdout
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/admixtools/container.yaml
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Expand Up @@ -4,10 +4,10 @@ maintainer: '@vsoch'
description: ADMIXTOOLS is a collection of programs which use genetic data to infer
how populations are related to one another.
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aliases:
convertf: /opt/view/bin/convertf
dowtjack: /opt/view/bin/dowtjack
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/advancecomp/container.yaml
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Expand Up @@ -4,10 +4,10 @@ maintainer: '@vsoch'
description: AdvanceCOMP is a set of cross-platform command line data (re-)compression
tools.
latest:
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aliases:
advdef: /opt/view/bin/advdef
advmng: /opt/view/bin/advmng
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/alan/container.yaml
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Expand Up @@ -3,9 +3,9 @@ url: https://github.com/orgs/autamus/packages/container/package/alan
maintainer: '@vsoch'
description: A simple in-terminal alignment viewer.
latest:
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aliases:
alan: /opt/view/bin/alan
6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/angsd/container.yaml
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Expand Up @@ -3,9 +3,9 @@ url: https://github.com/orgs/autamus/packages/container/package/angsd
maintainer: '@vsoch'
description: ANGSD is a software for analyzing next generation sequencing data.
latest:
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aliases:
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/argobots/container.yaml
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Expand Up @@ -4,7 +4,7 @@ maintainer: '@vsoch'
description: A lightweight runtime system that supports integrated computation and
data movement with massive concurrency.
latest:
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/aria2/container.yaml
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Expand Up @@ -4,9 +4,9 @@ maintainer: '@vsoch'
description: aria2 is a lightweight multi-protocol & multi-source command-line download
utility.
latest:
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aliases:
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/ascent/container.yaml
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Expand Up @@ -4,8 +4,8 @@ maintainer: '@vsoch'
description: An open source many-core capable lightweight in situ visualization and
analysis infrastructure for multi-physics HPC simulations.
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/astral/container.yaml
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Expand Up @@ -4,9 +4,9 @@ maintainer: '@vsoch'
description: ASTRAL is a tool for estimating an unrooted species tree given a set
of unrooted gene trees.
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/bart/container.yaml
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Expand Up @@ -3,10 +3,10 @@ url: https://github.com/orgs/autamus/packages/container/package/bart
maintainer: '@vsoch'
description: 'BART: Toolbox for Computational Magnetic Resonance Imaging'
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bartview: /opt/view/bin/bartview
6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/bbmap/container.yaml
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Expand Up @@ -4,7 +4,7 @@ maintainer: '@vsoch'
description: A suite of fast, multithreaded bioinformatics tools designed for analysis
of DNA and RNA sequence data.
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/bcftools/container.yaml
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Expand Up @@ -4,9 +4,9 @@ maintainer: '@vsoch'
description: BCFtools is a set of utilities that manipulate variant calls in the Variant
Call Format (VCF) and its binary counterpart BCF.
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aliases:
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/beast2/container.yaml
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Expand Up @@ -4,11 +4,11 @@ maintainer: '@vsoch'
description: BEAST 2 is a cross-platform program for Bayesian phylogenetic analysis
of molecular sequences.
latest:
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aliases:
beast: /opt/view/bin/beast
beasti: /opt/view/bin/beasti
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/bedops/container.yaml
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Expand Up @@ -5,10 +5,10 @@ description: BEDOPS is an open-source command-line toolkit that performs highly
and scalable Boolean and other set operations, statistical calculations, archiving,
conversion and other management of genomic data of arbitrary scale.
latest:
2.4.39: sha256:af6de857737f20af944ce09d84628be7e67d5cae36b0d90331958bfc6b8527e9
2.4.39: sha256:dfeab119cd7ea1b59a42146a76c66334f1a0cb9aed4cd2932a1e10f1ae7fdb8d
tags:
2.4.39: sha256:af6de857737f20af944ce09d84628be7e67d5cae36b0d90331958bfc6b8527e9
latest: sha256:af6de857737f20af944ce09d84628be7e67d5cae36b0d90331958bfc6b8527e9
2.4.39: sha256:dfeab119cd7ea1b59a42146a76c66334f1a0cb9aed4cd2932a1e10f1ae7fdb8d
latest: sha256:dfeab119cd7ea1b59a42146a76c66334f1a0cb9aed4cd2932a1e10f1ae7fdb8d
aliases:
bam2bed: /opt/view/bin/bam2bed
bam2bed_gnuParallel: /opt/view/bin/bam2bed_gnuParallel
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/bedtools2/container.yaml
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Expand Up @@ -3,10 +3,10 @@ url: https://github.com/orgs/autamus/packages/container/package/bedtools2
maintainer: '@vsoch'
description: The swiss army knife for genome arithmetic
latest:
2.30.0: sha256:e4fe65e9e953468367c2146ecbdb45b148b7e5271f94e16efafca0c02aec75cc
2.30.0: sha256:ffc4b941ceb8cb99b53cb6b89ca3c05f2f3fe33a14ed59025f8a4b7e10f998f3
tags:
2.30.0: sha256:e4fe65e9e953468367c2146ecbdb45b148b7e5271f94e16efafca0c02aec75cc
latest: sha256:e4fe65e9e953468367c2146ecbdb45b148b7e5271f94e16efafca0c02aec75cc
2.30.0: sha256:ffc4b941ceb8cb99b53cb6b89ca3c05f2f3fe33a14ed59025f8a4b7e10f998f3
latest: sha256:ffc4b941ceb8cb99b53cb6b89ca3c05f2f3fe33a14ed59025f8a4b7e10f998f3
aliases:
annotateBed: /opt/view/bin/annotateBed
bamToBed: /opt/view/bin/bamToBed
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6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/boost/container.yaml
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Expand Up @@ -3,7 +3,7 @@ url: https://github.com/orgs/autamus/packages/container/package/boost
maintainer: '@vsoch'
description: The Boost project provides free peer-reviewed portable C++ source libraries.
latest:
1.75.0: sha256:946e4f54d4bb4add9293b13350180b860a20df4584fa2d138cfc0d4f8e4a5417
1.75.0: sha256:5039461721ced98ffa04e5f98f189636f1adf515ddfdca07e9d3e304d566d996
tags:
1.75.0: sha256:946e4f54d4bb4add9293b13350180b860a20df4584fa2d138cfc0d4f8e4a5417
latest: sha256:946e4f54d4bb4add9293b13350180b860a20df4584fa2d138cfc0d4f8e4a5417
1.75.0: sha256:5039461721ced98ffa04e5f98f189636f1adf515ddfdca07e9d3e304d566d996
latest: sha256:5039461721ced98ffa04e5f98f189636f1adf515ddfdca07e9d3e304d566d996
6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/bracken/container.yaml
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Expand Up @@ -5,7 +5,7 @@ description: Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highl
accurate statistical method that computes the abundance of species in DNA sequences
from a metagenomics sample.
latest:
1.0.0: sha256:4e936aaed094f83fed9f5f72fcf2bbee56da6a6e972c08ac5601b1669b7575ea
1.0.0: sha256:104dc22af5e0a383f733cb21e230e0a4768c159fc5c5c79b2a5b16daec0272c7
tags:
1.0.0: sha256:4e936aaed094f83fed9f5f72fcf2bbee56da6a6e972c08ac5601b1669b7575ea
latest: sha256:4e936aaed094f83fed9f5f72fcf2bbee56da6a6e972c08ac5601b1669b7575ea
1.0.0: sha256:104dc22af5e0a383f733cb21e230e0a4768c159fc5c5c79b2a5b16daec0272c7
latest: sha256:104dc22af5e0a383f733cb21e230e0a4768c159fc5c5c79b2a5b16daec0272c7
6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/bwa/container.yaml
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Expand Up @@ -4,9 +4,9 @@ maintainer: '@vsoch'
description: BWA is a software package for mapping low-divergent sequences against
a large reference genome, such as the human genome.
latest:
0.7.17: sha256:046c59960a4b9e7394746b984c5808e8037f42b9fe05a020c3c03a020af2dd19
0.7.17: sha256:388f00b3f549fbe059182fc66868ec07355afa30b2e5d9ccc71c8917f0097e52
tags:
0.7.17: sha256:046c59960a4b9e7394746b984c5808e8037f42b9fe05a020c3c03a020af2dd19
latest: sha256:046c59960a4b9e7394746b984c5808e8037f42b9fe05a020c3c03a020af2dd19
0.7.17: sha256:388f00b3f549fbe059182fc66868ec07355afa30b2e5d9ccc71c8917f0097e52
latest: sha256:388f00b3f549fbe059182fc66868ec07355afa30b2e5d9ccc71c8917f0097e52
aliases:
bwa: /opt/view/bin/bwa
6 changes: 3 additions & 3 deletions registry/ghcr.io/autamus/cantera/container.yaml
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Expand Up @@ -4,8 +4,8 @@ maintainer: '@vsoch'
description: Cantera is an open-source collection of object-oriented software tools
for problems involving chemical kinetics, thermodynamics, and transport processes.
latest:
2.5.1: sha256:d23871fef4e7ff81e40b5ae4c775fe9a4a3f3c81e4195820e6872e379a0c6237
2.5.1: sha256:5315e01ecff2edf3d352d85c0d2430f93ee56b876fcf1580147abd8a251fdabc
tags:
2.4.0: sha256:ad490652d6f83f71cb56b6195f92ec4837671ceafcdb897d66393e564cde9699
2.5.1: sha256:d23871fef4e7ff81e40b5ae4c775fe9a4a3f3c81e4195820e6872e379a0c6237
latest: sha256:d23871fef4e7ff81e40b5ae4c775fe9a4a3f3c81e4195820e6872e379a0c6237
2.5.1: sha256:5315e01ecff2edf3d352d85c0d2430f93ee56b876fcf1580147abd8a251fdabc
latest: sha256:5315e01ecff2edf3d352d85c0d2430f93ee56b876fcf1580147abd8a251fdabc
7 changes: 4 additions & 3 deletions registry/ghcr.io/autamus/cctools/container.yaml
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Expand Up @@ -5,10 +5,11 @@ description: The Cooperative Computing Tools (CCTools) are a collection of progr
that enable large scale distributed computing on systems such as clusters, clouds,
and grids.
latest:
7.2.4: sha256:0f8d8b5ef556bce3aab4fd70ce4b1f085d1116b2950d772db472e2d2ecb68be0
7.2.10: sha256:3b1fa5ce23070f675c829ab804734ab7c4b282915fcf3e86968abeb556440372
tags:
7.2.4: sha256:0f8d8b5ef556bce3aab4fd70ce4b1f085d1116b2950d772db472e2d2ecb68be0
latest: sha256:0f8d8b5ef556bce3aab4fd70ce4b1f085d1116b2950d772db472e2d2ecb68be0
7.2.4: sha256:c685c9bfa6ad095519d8102dd024acd4c27434444b3da5e5c2fd745ebc09444d
7.2.10: sha256:3b1fa5ce23070f675c829ab804734ab7c4b282915fcf3e86968abeb556440372
latest: sha256:3b1fa5ce23070f675c829ab804734ab7c4b282915fcf3e86968abeb556440372
aliases:
c_rehash: /opt/view/bin/c_rehash
captoinfo: /opt/view/bin/captoinfo
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