Refactoring

Signed-off-by: zethson <[email protected]>
scverse · Aug 24, 2023 · da1ed9b · da1ed9b
1 parent 304f5f8
commit da1ed9b
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Showing 4 changed files with 5 additions and 23 deletions.
diff --git a/.github/workflows/publish_docs.yml b/.github/workflows/publish_docs.yml
@@ -18,11 +18,8 @@ jobs:
             - name: Install pip
               run: python -m pip install --upgrade pip
 
-            - name: Install doc dependencies
-              run: pip install -r docs/requirements.txt
-
-            - name: Install pertpy
-              run: pip install . ete3 pyqt5
+            - name: Install pertpy with docs
+              run: pip install .[doc]
 
             - name: Build docs
               run: |

diff --git a/docs/requirements.txt b/docs/requirements.txt
diff --git a/pertpy/__init__.py b/pertpy/__init__.py
@@ -11,6 +11,7 @@
 
 warnings.filterwarnings("ignore", category=NumbaDeprecationWarning)
 warnings.filterwarnings("ignore", category=MatplotlibDeprecationWarning)
+warnings.filterwarnings("ignore", category=UserWarning)
 
 from . import data as dt
 from . import plot as pl

diff --git a/pyproject.toml b/pyproject.toml
@@ -51,13 +51,13 @@ dependencies = [
     "sparsecca",
     "numba",
     "remotezip",
-    "openpyxl"
+    "openpyxl",
 ]
 
 [project.optional-dependencies]
 coda = [
     "ete3",
-    "pyqt5"
+    "pyqt5"  # remove this after ete4 got released
 ]
 dev = [
     "pre-commit",