Rust toolbox for Efficient Global Optimization inspired by the EGO implementation in the SMT Python library.
The egobox package is twofold:
- for end-users: a Python module, the Python binding of the optimizer named
Egorand the surrogate modelGpx, mixture of Gaussian processes, written in Rust. - for developers: a set of Rust libraries useful to implement bayesian optimization (EGO-like) algorithms,
pip install egoboximport numpy as np
import egobox as egx
# Objective function
def f_obj(x: np.ndarray) -> np.ndarray:
return (x - 3.5) * np.sin((x - 3.5) / (np.pi))
# Minimize f_opt in [0, 25]
res = egx.Egor(egx.to_specs([[0.0, 25.0]]), seed=42).minimize(f_obj, max_iters=20)
print(f"Optimization f={res.y_opt} at {res.x_opt}") # Optimization f=[-15.12510323] at [18.93525454]import numpy as np
import egobox as egx
# Training
xtrain = np.array([[0.0, 1.0, 2.0, 3.0, 4.0]]).T
ytrain = np.array([[0.0, 1.0, 1.5, 0.9, 1.0]]).T
gpx = egx.Gpx.builder().fit(xtrain, ytrain)
# Prediction
xtest = np.linspace(0, 4, 20).reshape((-1, 1))
ytest = gpx.predict(xtest)See the tutorial notebooks and examples folder for more information on the usage of the optimizer and mixture of Gaussian processes surrogate model.
egobox Rust libraries consists of the following sub-packages.
| Name | Version | Documentation | Description |
|---|---|---|---|
| doe |  |
 |
sampling methods; contains LHS, FullFactorial, Random methods |
| gp |  |
 |
gaussian process regression; contains Kriging, PLS dimension reduction and sparse methods |
| moe |  |
 |
mixture of experts using GP models |
| ego |  |
 |
efficient global optimization with constraints and mixed integer handling |
Depending on the sub-packages you want to use, you have to add following declarations to your Cargo.toml
[dependencies]
egobox-doe = { version = "0.24" }
egobox-gp = { version = "0.24" }
egobox-moe = { version = "0.24" }
egobox-ego = { version = "0.24" }
The table below presents the various features available depending on the subcrate
| Name | doe | gp | moe | ego |
|---|---|---|---|---|
| serializable | ✔️ | ✔️ | ✔️ | |
| persistent | ✔️ | ✔️(*) | ||
| blas | ✔️ | ✔️ | ✔️ | |
| nlopt | ✔️ | ✔️ |
(*) required for mixed-variable gaussian process
When selected, the serialization with serde crate is enabled.
When selected, the save and load as a json file with serde_json crate is enabled.
When selected, the usage of BLAS/LAPACK backend is possible, see below for more information.
When selected, the nlopt crate is used to provide optimizer implementations (ie Cobyla, Slsqp)
Examples (in examples/ sub-packages folder) are run as follows:
cd doe && cargo run --example samplings --releasecd gp && cargo run --example kriging --releasecd moe && cargo run --example clustering --releasecd ego && cargo run --example ackley --releaseegobox relies on linfa project for methods like clustering and dimension reduction, but also try to adopt as far as possible the same coding structures.
As for linfa, the linear algebra routines used in gp, moe ad ego are provided by the pure-Rust linfa-linalg crate, the default linear algebra provider.
Otherwise, you can choose an external BLAS/LAPACK backend available through the ndarray-linalg crate. In this case, you have to specify the blas feature and a linfa BLAS/LAPACK backend feature (more information in linfa features).
Thus, for instance, to use gp with the Intel MKL BLAS/LAPACK backend, you could specify in your Cargo.toml the following features:
[dependencies]
egobox-gp = { version = "0.24", features = ["blas", "linfa/intel-mkl-static"] }
or you could run the gp example as follows:
cd gp && cargo run --example kriging --release --features blas,linfa/intel-mkl-staticIf you find this project useful for your research, you may cite it as follows:
@article{
Lafage2022,
author = {Rémi Lafage},
title = {egobox, a Rust toolbox for efficient global optimization},
journal = {Journal of Open Source Software}
year = {2022},
doi = {10.21105/joss.04737},
url = {https://doi.org/10.21105/joss.04737},
publisher = {The Open Journal},
volume = {7},
number = {78},
pages = {4737},
}
Additionally, you may consider adding a star to the repository. This positive feedback improves the visibility of the project.
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Licensed under the Apache License, Version 2.0 http://www.apache.org/licenses/LICENSE-2.0