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chore(master): update reana-commons to 0.95.0a5 (#706)
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@Alputer
Alputer committed Oct 30, 2024
1 parent c4be985 commit 70e8ad9
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Showing 2 changed files with 19 additions and 12 deletions.
29 changes: 18 additions & 11 deletions requirements.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,7 @@ alembic==1.10.4 # via flask-alembic, invenio-db, reana-db
amqp==5.2.0 # via kombu
appdirs==1.4.4 # via fs, snakemake
argcomplete==3.4.0 # via cwltool
argparse-dataclass==2.0.0 # via snakemake-interface-common, snakemake-interface-executor-plugins
arrow==1.3.0 # via isoduration
asttokens==2.4.1 # via stack-data
attrs==23.2.0 # via jsonschema
Expand All @@ -33,7 +34,8 @@ click-plugins==1.1.1 # via celery
click-repl==0.3.0 # via celery
coloredlogs==15.0.1 # via cwltool
commonmark==0.9.1 # via rich
configargparse==1.7 # via snakemake
conda-inject==1.3.2 # via snakemake
configargparse==1.7 # via snakemake, snakemake-interface-common
connection-pool==0.0.3 # via snakemake
cryptography==43.0.0 # via invenio-accounts, pyjwt, sqlalchemy-utils
cwltool==3.1.20210628163208 # via reana-commons
Expand All @@ -42,7 +44,7 @@ decorator==5.1.1 # via ipython, jsonpath-rw
deprecated==1.2.14 # via limits
dnspython==2.6.1 # via email-validator
docutils==0.21.2 # via snakemake
dpath==2.2.0 # via yte
dpath==2.2.0 # via snakemake, yte
email-validator==2.2.0 # via flask-security-invenio, wtforms-components
executing==2.0.1 # via stack-data
fastjsonschema==2.20.0 # via nbformat
Expand Down Expand Up @@ -71,6 +73,7 @@ flask-wtf==1.2.1 # via flask-security-invenio, invenio-oauth2server
fqdn==1.5.1 # via jsonschema
fs==2.4.16 # via reana-commons
future==1.0.0 # via invenio-oauth2server
gherkin-official==29.0.0 # via reana-commons
gitdb==4.0.11 # via gitpython
github3-py==4.0.1 # via invenio-oauthclient
gitpython==3.1.43 # via reana-server (setup.py), snakemake
Expand All @@ -79,6 +82,7 @@ google-auth==2.32.0 # via kubernetes
greenlet==3.0.3 # via sqlalchemy
humanfriendly==10.0 # via coloredlogs, snakemake
idna==3.7 # via email-validator, jsonschema, requests
immutables==0.21 # via snakemake
importlib-metadata==4.13.0 # via invenio-base, invenio-oauth2server, reana-server (setup.py)
importlib-resources==6.4.0 # via invenio-base, limits, swagger-spec-validator
infinity==1.5 # via intervals
Expand Down Expand Up @@ -136,6 +140,7 @@ oauthlib==2.1.0 # via flask-oauthlib, invenio-oauthclient, requests-oa
ordered-set==4.1.0 # via flask-limiter
packaging==24.1 # via limits, snakemake
packtivity==0.16.2 # via reana-server (setup.py), yadage
parse==1.20.2 # via reana-commons
parso==0.8.4 # via jedi
passlib==1.7.4 # via flask-security-invenio
pexpect==4.9.0 # via ipython
Expand All @@ -147,7 +152,7 @@ prov==1.5.1 # via cwltool
psutil==6.0.0 # via cwltool, snakemake, yadage
psycopg2-binary==2.9.9 # via invenio-db, reana-db
ptyprocess==0.7.0 # via pexpect
pulp==2.7.0 # via reana-commons, snakemake
pulp==2.7.0 # via snakemake
pure-eval==0.2.3 # via stack-data
pyasn1==0.6.0 # via pyasn1-modules, rsa
pyasn1-modules==0.4.0 # via google-auth
Expand All @@ -161,14 +166,14 @@ pyrsistent==0.20.0 # via jsonschema
python-dateutil==2.9.0.post0 # via arrow, bravado, bravado-core, celery, github3-py, kubernetes, prov
pytz==2024.1 # via bravado-core, flask-babel
pywebpack==2.0.0 # via flask-webpackext, invenio-assets
pyyaml==6.0.1 # via bravado, bravado-core, kubernetes, packtivity, reana-commons, snakemake, swagger-spec-validator, yadage, yadage-schemas, yte
pyyaml==6.0.1 # via bravado, bravado-core, conda-inject, kubernetes, packtivity, reana-commons, snakemake, swagger-spec-validator, yadage, yadage-schemas, yte
rdflib==5.0.0 # via cwltool, prov, schema-salad
reana-commons[cwl,kubernetes,snakemake,yadage]==0.95.0a3 # via reana-db, reana-server (setup.py)
reana-commons[cwl,kubernetes,snakemake,yadage]==0.95.0a5 # via reana-db, reana-server (setup.py)
reana-db==0.95.0a4 # via reana-server (setup.py)
redis==5.0.7 # via invenio-celery
requests[security]==2.32.3 # via bravado, bravado-core, cachecontrol, cwltool, github3-py, kubernetes, packtivity, reana-server (setup.py), requests-oauthlib, schema-salad, snakemake, yadage, yadage-schemas
requests-oauthlib==1.1.0 # via flask-oauthlib, invenio-oauth2server, invenio-oauthclient, kubernetes
reretry==0.11.8 # via snakemake
reretry==0.11.8 # via snakemake, snakemake-interface-storage-plugins
rfc3339-validator==0.1.4 # via jsonschema
rfc3987==1.3.8 # via jsonschema
rich==12.6.0 # via flask-limiter
Expand All @@ -182,18 +187,20 @@ simplekv==0.14.1 # via flask-kvsession-invenio, invenio-accounts
six==1.16.0 # via asttokens, bravado, bravado-core, flask-kvsession-invenio, flask-talisman, fs, isodate, jsonpath-rw, kubernetes, mock, prov, python-dateutil, rdflib, reana-server (setup.py), rfc3339-validator, wtforms-components
smart-open==7.0.4 # via snakemake
smmap==5.0.1 # via gitdb
snakemake==7.32.4 # via reana-commons
snakemake==8.24.1 # via reana-commons
snakemake-interface-common==1.17.4 # via reana-commons, snakemake, snakemake-interface-executor-plugins, snakemake-interface-report-plugins, snakemake-interface-storage-plugins
snakemake-interface-executor-plugins==9.3.2 # via reana-commons, snakemake
snakemake-interface-report-plugins==1.1.0 # via reana-commons, snakemake
snakemake-interface-storage-plugins==3.3.0 # via reana-commons, snakemake
speaklater==1.3 # via flask-security-invenio
sqlalchemy[asyncio]==1.4.52 # via alembic, flask-alembic, flask-sqlalchemy, invenio-db, reana-db, sqlalchemy-continuum, sqlalchemy-utils, wtforms-alchemy
sqlalchemy-continuum==1.4.1 # via invenio-db
sqlalchemy-utils[encrypted]==0.38.3 # via invenio-db, reana-db, sqlalchemy-continuum, sqlalchemy-utils, wtforms-alchemy
stack-data==0.6.3 # via ipython
stopit==1.1.2 # via snakemake
swagger-spec-validator==3.0.4 # via bravado-core
tablib==3.6.1 # via reana-server (setup.py)
tabulate==0.9.0 # via snakemake
throttler==1.2.2 # via snakemake
toposort==1.10 # via snakemake
throttler==1.2.2 # via snakemake, snakemake-interface-executor-plugins, snakemake-interface-storage-plugins
traitlets==5.14.3 # via ipython, jupyter-core, matplotlib-inline, nbformat
types-python-dateutil==2.9.0.20240316 # via arrow
typing-extensions==4.12.2 # via alembic, bravado, cwltool, flask-limiter, limits, swagger-spec-validator
Expand All @@ -215,7 +222,7 @@ webargs==5.5.3 # via invenio-rest
webcolors==24.6.0 # via jsonschema
websocket-client==1.8.0 # via kubernetes
werkzeug==2.2.3 # via flask, flask-kvsession-invenio, flask-login, invenio-base, reana-commons
wrapt==1.16.0 # via deprecated, smart-open, snakemake
wrapt==1.16.0 # via deprecated, smart-open, snakemake, snakemake-interface-storage-plugins
wtforms==2.3.3 # via flask-admin, flask-wtf, invenio-oauth2server, reana-server (setup.py), wtforms-alchemy, wtforms-components
wtforms-alchemy==0.18.0 # via invenio-oauth2server
wtforms-components==0.10.5 # via wtforms-alchemy
Expand Down
2 changes: 1 addition & 1 deletion setup.py
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Original file line number Diff line number Diff line change
Expand Up @@ -48,7 +48,7 @@
"Flask>=2.1.1,<2.3.0", # same upper pin as invenio-base
"gitpython>=3.1",
"marshmallow>2.13.0,<3.0.0",
"reana-commons[kubernetes,yadage,snakemake,cwl] @ git+https://github.com/reanahub/[email protected]",
"reana-commons[kubernetes,yadage,snakemake,cwl]>=0.95.0a5,<0.96.0",
"reana-db>=0.95.0a4,<0.96.0",
"requests>=2.25.0",
"tablib>=0.12.1",
Expand Down

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