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Hi there,
there is still room for improvement, but I wanted to suggest the toml for further discussion.
I added the following dependency groups:
But tests, dev and ci are pretty similar.
Do you want to enforce using pre-commit for contributors? That is always a good idea. But if you want to use isort, flake8, (maybe black), you need to have on linting/reformatting-PR, I guess with the described 600+ files being changed. Also pre-commit should run on CI.
I can add isort settings, flake8 sadly cannot be configured using the toml file. I would nowadays always recommend using ruff, which is really great and fast and adopted by major projects like pandas. ruff can replace isort and flake8 in my opinion.
Another question is still #648. The installation process using the toml file does not work with Python 3.6.
What do you think?