Add LSQ-ML reconstruction engine #831
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Tests | |
| on: | |
| # Trigger the workflow on push or pull request, | |
| # but only for the main branch | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| - dev | |
| - hotfixes | |
| # Also trigger on page_build, as well as release created events | |
| page_build: | |
| release: | |
| types: # This configuration does not affect the page_build event above | |
| - created | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 10 | |
| fail-fast: false | |
| matrix: | |
| python-version: | |
| - "3.8" | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| - "3.12" | |
| conda-env: | |
| - "core" | |
| - "full" | |
| name: Python ${{ matrix.python-version }} and ${{ matrix.conda-env }} dependencies | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Add conda to system path | |
| run: | | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| conda --version | |
| conda info | |
| - name: Make sure conda is updated | |
| run: | | |
| conda update conda | |
| conda --version | |
| - name: Install ${{ matrix.conda-env }} dependencies | |
| run: | | |
| # replace python version in dependencies | |
| sed -i 's/python/python=${{ matrix.python-version }}/' dependencies_${{ matrix.conda-env }}.yml | |
| if [ ${{ matrix.conda-env }} == 'full' ] && [ ${{ matrix.python-version }} == '3.12' ]; then | |
| sed -i '/- pyfftw/d' dependencies_${{ matrix.conda-env }}.yml | |
| fi | |
| # if [ ${{ matrix.conda-env }} == 'full' ] && [ ${{ matrix.python-version }} == '3.8' ]; then | |
| # sed -i '/- mpi4py/d' dependencies_${{ matrix.conda-env }}.yml | |
| # fi | |
| # if [ ${{ matrix.conda-env }} == 'full' ] && [ ${{ matrix.python-version }} == '3.9' ]; then | |
| # sed -i '/- mpi4py/d' dependencies_${{ matrix.conda-env }}.yml | |
| # fi | |
| conda install --solver=classic mpich | |
| conda env update --file dependencies_${{ matrix.conda-env }}.yml --name base | |
| conda install --solver=classic flake8 pytest pytest-cov | |
| conda list | |
| - name: Prepare ptypy | |
| run: | | |
| # Install ptypy | |
| pip install . | |
| - name: Lint with flake8 | |
| run: | | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| # pytest ptypy/test -v --doctest-modules --junitxml=junit/test-results.xml --cov=ptypy --cov-report=xml --cov-report=html --cov-config=.coveragerc | |
| pytest -v | |
| # - name: cobertura-report | |
| # if: github.event_name == 'pull_request' && (github.event.action == 'opened' || github.event.action == 'reopened' || github.event.action == 'synchronize') | |
| # uses: 5monkeys/cobertura-action@v7 | |
| # with: | |
| # # The GITHUB_TOKEN for this repo | |
| # repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| # # Path to the cobertura file. | |
| # path: coverage.xml | |
| # # If files with 100% should be skipped from report. | |
| # skip_covered: true | |
| # # Minimum allowed coverage percentage as an integer. | |
| # minimum_coverage: 90 | |
| # only_changed_files: true | |
| # - name: Junit Report to Annotations | |
| # uses: ashley-taylor/junit-report-annotations-action@master | |
| # with: | |
| # # github token | |
| # access-token: ${{ secrets.GITHUB_TOKEN }} | |
| # # glob to junit xml files | |
| # path: junit/test-results.xml | |
| # # include summary annotation | |
| # includeSummary: true | |
| # # max number of failed tests to include | |
| # numFailures: 10 |