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updated default databases to null #71

Merged
merged 17 commits into from
May 2, 2024
Merged

updated default databases to null #71

merged 17 commits into from
May 2, 2024

Commits on May 1, 2024

  1. updated default databases to null

    @mattheww95
    mattheww95 committed May 1, 2024
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  2. updated nextflow_shema.json 

    Added option to check that db passed to mikrokondo exists
    @mattheww95
    mattheww95 committed May 1, 2024
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  3. Fix error with passing null to file()

    @apetkau
    apetkau committed May 1, 2024
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  4. Fixed up parameters for test config

    @apetkau
    apetkau committed May 1, 2024
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  5. A few other fixes with null files

    @apetkau
    apetkau committed May 1, 2024
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  6. Fixed up case of null bakta_db

    @apetkau
    apetkau committed May 1, 2024
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  7. Added additional check for kraken2 db

    @apetkau
    apetkau committed May 1, 2024
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  8. Update nextflow_schema.json 

    Added the Kraken2 database as a required parameter
    @mattheww95
    mattheww95 authored May 1, 2024
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  9. updated tests to include kraken2 test DB 

    If db validation failures occur, it is due to the database for kraken2 not being able to be found
    @mattheww95
    mattheww95 committed May 1, 2024
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  10. updated kraken2 test db path

    @mattheww95
    mattheww95 committed May 1, 2024
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  11. Updated version and changelog

    @apetkau
    apetkau committed May 1, 2024
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  12. Added kraken2 db for test config

    @apetkau
    apetkau committed May 1, 2024
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  13. Switched to error messages

    @apetkau
    apetkau committed May 1, 2024
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  14. Expanded tests

    @apetkau
    apetkau committed May 1, 2024
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  15. Switched order of kraken2 database in schema

    @apetkau
    apetkau committed May 1, 2024
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Commits on May 2, 2024

  1. Hide bakta parameters from IRIDA Next UI

    @apetkau
    apetkau committed May 2, 2024
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  2. Fixed some whitespace

    @apetkau
    apetkau committed May 2, 2024
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