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added bio.tools to kat_filter #260

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added bio.tools to kat_filter #260

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5f712da
link to bio.tools
Mar 12, 2024
4895650
added bio.tools link
Mar 12, 2024
ae2951f
update kat
Mar 12, 2024
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5 changes: 5 additions & 0 deletions tools/getmlst/getmlst.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,11 @@
<requirements>
<requirement type="package" version="0.1.4.6">srst2</requirement>
</requirements>
<xml name="xrefs">
<xrefs>
<xref type="bio.tools">getmlst</xref>
</xrefs>
</xml>
<stdio>
<exit_code range="2" level="fatal" description="Please be more specific."/>
<exit_code range="1" level="fatal" description="No species matched your query."/>
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5 changes: 5 additions & 0 deletions tools/hivtrace/hivtrace.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,6 +4,11 @@
<requirements>
<requirement type="package" version="0.1.4">hivtrace</requirement>
</requirements>
<xml name="xrefs">
<xrefs>
<xref type="bio.tools">hivtrace</xref>
</xrefs>
</xml>
<stdio>
<exit_code range="1:" />
</stdio>
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1 change: 1 addition & 0 deletions tools/kat_filter/kat_filter.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,7 @@
<token name="@EXECUTABLE@">filter_seq</token>
<import>macros.xml</import>
</macros>
<expand macro="biotools" />
<expand macro="requirements" />
<expand macro="stdio" />
<expand macro="version_command" />
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5 changes: 5 additions & 0 deletions tools/kat_filter/macros.xml
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Original file line number Diff line number Diff line change
Expand Up @@ -5,6 +5,11 @@
<requirement type="package" version="2.3.1">kat</requirement>
</requirements>
</xml>
<xml name="biotools">
<xrefs>
<xref type="bio.tools">kat</xref>
</xrefs>
</xml>
<xml name="stdio">
<stdio>
<exit_code range="1:" />
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