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Add bio.tools for filter spades repeats #256

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Add bio.tools for filter spades repeats #256

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1659d39
Update .shed.yml to include the correct remote repository url
EngyNasr Mar 11, 2024
2066048
Update filter_spades_repeats.xml to include the bio tools id of the tool
EngyNasr Mar 11, 2024
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2 changes: 1 addition & 1 deletion tools/filter_spades_repeats/.shed.yml
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Expand Up @@ -3,5 +3,5 @@ description: Remove short and repeat contigs/scaffolds
name: filter_spades_repeats
owner: nml
long_description: Using the output of SPAdes (a fasta and a stats file, either from contigs or scaffolds), it filters the fasta files, discarding all sequences that are under a given length or under a calculated coverage. Repeated contigs are detected based on coverage.
remote_repository_url: https://github.com/phac-nml/galaxy_tools/
remote_repository_url: https://github.com/phac-nml/galaxy_tools/tree/master/tools/filter_spades_repeats
homepage_url: https://github.com/phac-nml/galaxy_tools/
3 changes: 3 additions & 0 deletions tools/filter_spades_repeats/filter_spades_repeats.xml
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@@ -1,5 +1,8 @@
<tool id="filter_spades_repeat" name="Filter SPAdes repeats" version="1.0.1">
<description>Remove short and repeat contigs/scaffolds</description>
<xrefs>
<xref type="bio.tools">filter_spades_repeats</xref>
</xrefs>
<requirements>
<requirement type="package" version="1.6.924">perl-bioperl</requirement>
</requirements>
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