Repositories list

• biopkgs

  Public
  Custom Nix packages not yet available on NixOS/nixpkgs

  Nix

  •2•1•0•6•Updated Dec 8, 2022Dec 8, 2022

• bionode-gff

  Public
  GFF parser

  nodejsparserbioinformatics+ 2toolsbionode

  JavaScript

  •3•3•2•5•Updated Nov 10, 2022Nov 10, 2022

• fasta-parser

  Public
  Buffer Stream parser from FASTA to JSON.

  nodejsparserlibrary+ 3bioinformaticsbuffersbionode

  JavaScript

  •

  MIT License

  •4•6•1•2•Updated Sep 2, 2020Sep 2, 2020

• cocalc-docker

  Public
  Docker setup for running CoCalc as downloadable software on your own computer

  Dockerfile

  •104•0•0•0•Updated Aug 5, 2020Aug 5, 2020

• bionode

  Public
  Modular and universal bioinformatics

  nodejsbioinformaticstools+ 3metapackageos4opensciencebionode

  JavaScript

  •

  MIT License

  •39•313•15•0•Updated Nov 19, 2019Nov 19, 2019

• bionode-fasta

  Public
  Streamable FASTA parser.

  nodejsparserbioinformatics+ 2toolsbionode

  JavaScript

  •

  MIT License

  •9•14•1•0•Updated Nov 19, 2019Nov 19, 2019

• bionode-ncbi

  Public
  Node.js module for working with the NCBI API (aka e-utils).

  nodejsbioinformaticstool+ 2api-clientbionode

  JavaScript

  •

  MIT License

  •20•65•5•0•Updated Nov 19, 2019Nov 19, 2019

• bioflow

  Public
  0•0•0•0•Updated Jan 12, 2019Jan 12, 2019

• bionode-sra

  Public
  Node.js wrapper for SRA Toolkit

  nodejswrapperbioinformatics+ 2toolbionode

  JavaScript

  •

  MIT License

  •3•6•1•0•Updated Jan 9, 2019Jan 9, 2019

• biohacker

  Public
  A nodeschool workshop that gives some usage examples of bionode for bioinformatics

  nodejsdockertutorial+ 3try-bionode-iobioinformaticsbionode

  JavaScript

  •2•5•2•0•Updated Oct 28, 2018Oct 28, 2018

• gsoc18

  Public
  JavaScript

  •1•0•0•0•Updated Aug 12, 2018Aug 12, 2018

• bionode-watermill

  Public
  💧Bionode-Watermill: A (Not Yet Streaming) Workflow Engine

  nodejsbioinformaticstool+ 2bionodepipeline

  JavaScript

  •

  MIT License

  •11•37•30•0•Updated Jun 27, 2018Jun 27, 2018

• bionode-watermill-tutorial

  Public
  This is a tutorial for bionode-watermill

  JavaScript

  •3•1•1•0•Updated Apr 26, 2018Apr 26, 2018

• GSoC17

  Public
  GSoC Project: Streaming Workflow Engine

  JavaScript

  •5•0•2•0•Updated Mar 31, 2018Mar 31, 2018

• bionode-vcf

  Public
  vcf parser using javascript

  nodejsparserbioinformatics+ 2toolbionode

  JavaScript

  •

  MIT License

  •7•5•5•0•Updated Mar 22, 2018Mar 22, 2018

• bionode-fastq

  Public
  Streamable FASTQ parser

  nodejsparserbioinformatics+ 2toolbionode

  JavaScript

  •

  MIT License

  •4•2•2•0•Updated Oct 4, 2017Oct 4, 2017

• bionode-blast

  Public
  NodeJS API wrapping the NCBI BLAST Common URL API. WIP.

  nodejsbioinformaticstool+ 2api-clientbionode

  JavaScript

  •3•1•0•0•Updated Oct 4, 2017Oct 4, 2017

• bionode-quickgo

  Public
  Acess EBI QuickGO REST API with promises and streams.

  nodejsbioinformaticstool+ 2api-clientbionode

  JavaScript

  •2•1•1•0•Updated Oct 4, 2017Oct 4, 2017

• bionode-scripts

  Public
  Random useful scripts

  nodejsbioinformaticsscripts+ 1bionode

  JavaScript

  •2•0•1•0•Updated Oct 4, 2017Oct 4, 2017

• events

  Public
  Gather together a group to skill-share, co-work, and create community

  websiteworkshops

  JavaScript

  •

  Other

  •534•0•1•0•Updated Oct 4, 2017Oct 4, 2017

• bionode.io

  Public
  Bionode website

  websitebionode

  HTML

  •4•2•0•0•Updated Sep 14, 2017Sep 14, 2017

• github-project-public

  Public
  Make GitHub project board visible to non members

  CSS

  •

  MIT License

  •11•1•1•0•Updated Sep 14, 2017Sep 14, 2017

• doc.bionode.io

  Public
  Beautiful static documentation for your API

  websitebionode

  JavaScript

  •

  Other

  •22k•0•0•0•Updated Sep 14, 2017Sep 14, 2017

• bionode-sam

  Public
  Node.js wrapper for samtools.

  nodejswrapperbioinformatics+ 2toolbionode

  JavaScript

  •

  MIT License

  •4•5•3•0•Updated Aug 28, 2017Aug 28, 2017

• bionode-seq

  Public
  Module for DNA, RNA and protein sequences manipulation

  nodejsbioinformaticstool+ 2sequencesbionode

  JavaScript

  •

  MIT License

  •5•10•3•0•Updated Aug 24, 2017Aug 24, 2017

• bionode-obo

  Public
  Streaming OBO 1.2 Parser

  nodejsparserbioinformatics+ 2toolbionode

  JavaScript

  •4•3•13•0•Updated Aug 24, 2017Aug 24, 2017

• timeline

  Public
  [project] gantt chart for msl

  JavaScript

  •12•1•0•0•Updated Jun 13, 2017Jun 13, 2017

• bionode-bwa

  Public
  A Node.js wrapper for the Burrow-Wheeler Aligner (BWA).

  nodejswrapperbioinformatics+ 2toolbionode

  JavaScript

  •

  MIT License

  •3•7•1•0•Updated Jun 1, 2017Jun 1, 2017

• bionode-examples

  Public
  Bionode usage example files

  nodejsbioinformaticsexamples+ 1bionode

  JavaScript

  •1•6•0•0•Updated Jun 1, 2017Jun 1, 2017

• bionode-go

  Public
  Gene Ontology in Bionode (WIP)

  nodejsbioinformaticstool+ 2api-clientbionode

  JavaScript

  •3•7•0•0•Updated Jun 1, 2017Jun 1, 2017