Repositories list

• CalcSim

  Public
  Matlab-based code for simulating detailed calcium dynamics in neurons, using reconstructed neuron morphologies

  MATLAB

  •

  GNU Lesser General Public License v2.1

  •0•0•0•0•Updated Jun 29, 2024Jun 29, 2024

• neuromorpho

  Public
  Making use of the REST API (NeuroMorpho.org v7) to query the database

  Python

  •

  MIT License

  •3•10•1•1•Updated Jun 20, 2023Jun 20, 2023

• calciumDynamics_app

  Public
  UG4 app providing Lua scripts for calcium dynamics simulations on neurons

  Lua

  •

  Other

  •2•0•0•0•Updated Jan 3, 2022Jan 3, 2022

• Biofilm

  Public
  Java

  •

  Other

  •0•0•0•0•Updated Nov 27, 2021Nov 27, 2021

• neuro_collection

  Public
  UG4 plugin for unified neuro-related functionality

  C++

  •

  Other

  •1•1•0•0•Updated Nov 2, 2021Nov 2, 2021

• VRL-NeuroBox-Plugin

  Public
  VRL-NeuroBox-Plugin is the plugin for detailed simulations in Neuroscience.

  javacomputational-neurosciencevrl-studio+ 3detailedsimulationsneurobiology

  Java

  •1•2•5•0•Updated Jul 29, 2021Jul 29, 2021

• ProMeshScripts

  Public
  Scripts for ProMesh

  imagejgenerationpromesh+ 4polygonstxtgridbiofilm

  Lua

  •0•0•0•0•Updated May 31, 2021May 31, 2021

• cable_neuron_app

  Public
  UG4 app providing Lua scripts for cable equation simulations on "1d" neurons

  Lua

  •

  Other

  •0•0•0•0•Updated Jan 30, 2021Jan 30, 2021

• electricalModelingScripts

  Public
  Contains a collection of scripts for a quantitative comparison of various models for electrical signal processing in neurons

  Lua

  •

  Other

  •0•0•0•0•Updated Jan 10, 2021Jan 10, 2021

• NeuGen

  Public
  NeuGen is made for generation of dendritic and axonal morphology of realistic neurons and networks in 3D

  javasimulationmorphology+ 1neurons

  Java

  •

  GNU Lesser General Public License v3.0

  •2•12•1•0•Updated Nov 25, 2020Nov 25, 2020

• electro_diffusion

  Public
  UG4 plugin for simulation of Poisson-Nernst-Planck problems

  C++

  •

  Other

  •0•0•0•0•Updated Oct 12, 2020Oct 12, 2020

• cable_neuron

  Public
  UG4 plugin providing functionality for cable equation simulations on "1d" neurons

  C++

  •

  Other

  •0•0•0•0•Updated Oct 6, 2020Oct 6, 2020

• AnaMorph

  Public
  Framework for creating 3d neuronal morphologies from point/diameter descriptions.

  C++

  •

  GNU Lesser General Public License v3.0

  •6•6•3•0•Updated Aug 26, 2020Aug 26, 2020

• VRL-Density-Vis

  Public
  Density Visualization Plugin for VRL

  Java

  •

  Other

  •1•0•0•0•Updated Jul 27, 2020Jul 27, 2020

• MembranePotentialMapping

  Public
  UG4 plugin for membrane potential mapping from 1d Neuron simulations to 3d

  C++

  •

  Other

  •1•0•0•0•Updated Jul 16, 2020Jul 16, 2020

• plugin_CrackGenerator

  Public
  The CrackGenerator ug4 plugin

  mesh-generation

  C++

  •

  Other

  •0•0•0•0•Updated Jun 11, 2020Jun 11, 2020

• Y-Generator

  Public
  Generates 2-way dendritic branches

  Kotlin

  •1•0•0•0•Updated Jun 3, 2020Jun 3, 2020

• neurobox3d.github.io

  Public
  The Neurobox website

  CSS

  •0•0•1•0•Updated May 12, 2020May 12, 2020

• neurobox3d

  Public
  CSS

  •0•0•0•0•Updated May 12, 2020May 12, 2020

• MembranePotentialMapping_app

  Public
  Example usage for the MembranePotentialMapping plugin

  Lua

  •

  Other

  •0•1•0•0•Updated May 1, 2020May 1, 2020

• neurobox-packages

  Public
  Neurobox packages for UG4

  packagecppplugins+ 3package-jsonugughub

  GNU Lesser General Public License v3.0

  •1•1•0•0•Updated Nov 1, 2019Nov 1, 2019

• tetgen143

  Public
  TetGen v1.4.3 source

  C++

  •

  Other

  •1•0•0•1•Updated Oct 7, 2019Oct 7, 2019

• app_CrackGenerator

  Public
  The CrackGenerator ug4 app.

  Lua

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Oct 14, 2018Oct 14, 2018

• build_tools

  Public
  contains some utility for building NeuroBox (for developers)

  Shell

  •0•0•0•0•Updated Oct 11, 2018Oct 11, 2018

• app_SkinLayerGenerator

  Public
  Generate skin layer volume meshes

  ugvrl-studiocomputational+ 1grids

  Lua

  •

  Other

  •0•0•0•0•Updated May 31, 2017May 31, 2017

• plugin_SkinLayerGenerator

  Public
  Generates volume meshes of vertical columns of skin layers:

  skinnumerical-calculationsgrid-generation+ 2promeshug

  C++

  •

  Other

  •0•0•2•0•Updated Apr 17, 2017Apr 17, 2017

• VRL-SkinLayerGenerator-Plugin

  Public
  The plugin generates volume meshes consisting of different skin layers.

  skinsimulationmodel+ 3numerical-calculationsvrl-studioug4

  Java

  •

  GNU Lesser General Public License v3.0

  •0•0•0•0•Updated Mar 15, 2017Mar 15, 2017

• plugin_Neurolucida

  Public
  Neurolucida ug4 plugin (Backend)

  gridxmlcomputational+ 2neurolucidaugx

  C++

  •0•2•0•0•Updated Mar 1, 2017Mar 1, 2017

• VRL-VolumeCalculator-Plugin

  Public
  VRL-VolumeCalculator-Plugin

  Java

  •2•0•0•0•Updated Dec 20, 2016Dec 20, 2016

• VRL-Neurolucida-Project

  Public
  VRL-Neurolucida-Project for VRL-Studio (Frontend)

  Java

  •

  GNU Lesser General Public License v3.0

  •1•1•0•0•Updated Sep 8, 2016Sep 8, 2016