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`.complete` method of `Transcript` class return a wrong result for some transcript ids. #252

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y9c opened this issue May 17, 2021 · 0 comments

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y9c commented May 17, 2021

pyensembl/pyensembl/transcript.py

Line 421 in 48bc7eb

return self.genome.transcript_sequences.get(self.id)

Minimum example.

cress_genome = pyensembl.Genome(
    reference_name="TAIR10",
    annotation_name="Arabidopsis_thaliana",
    gtf_path_or_url="./Arabidopsis_thaliana.TAIR10.genome.gtf",
    transcript_fasta_paths_or_urls="./Arabidopsis_thaliana.TAIR10.transcriptome.fa",
    protein_fasta_paths_or_urls="./Arabidopsis_thaliana.TAIR10.pep.all.fa.gz",
)

print(gene.transcripts[0].complete)

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