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Closes #791
I tested with
nextflow run d4straub/ampliseq -r add-dada2-silva-138.2 -profile cfc,test --outdir results_add-dada2-silva-138.2 -resume --dada_ref_taxonomy silva
and all seemed fine.PR checklist
nf-core pipelines lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).