Support Python 3.12 and test in CI #3026

Job	Run time
mypy	47s
pyright	22s
check-docs	33s
pathogen-repo-ci (dengue)	2m 40s
pathogen-repo-ci-v0 (avian-flu)	50s
pathogen-repo-ci (lassa)	42s
test (python=3.8 biopython=1.82)	11m 32s
pathogen-repo-ci-v0 (ebola)	53s
test (python=3.8 biopython=latest)	12m 2s
pathogen-repo-ci (measles)	1m 23s
pathogen-repo-ci-v0 (mumps)	57s
test (python=3.9 biopython=1.82)	12m 28s
pathogen-repo-ci (mpox)	1m 13s
pathogen-repo-ci-v0 (ncov)	59s
test (python=3.9 biopython=latest)	13m 6s
pathogen-repo-ci (seasonal-cov)	2m 7s
pathogen-repo-ci-v0 (rsv)	8m 53s
test (python=3.10 biopython=1.82)	13m 0s
pathogen-repo-ci-v0 (seasonal-flu)	1m 17s
pathogen-repo-ci (zika)	1m 19s
test (python=3.10 biopython=latest)	12m 39s
pathogen-repo-ci-v0 (tb)	1m 13s
test (python=3.11 biopython=1.82)	12m 30s
test (python=3.11 biopython=latest)	12m 32s
test (python=3.12 biopython=1.82)	19m 17s
test (python=3.12 biopython=latest)	19m 22s
build-docs / build	2m 11s
codecov	13s
release	0s
rebuild-docker-image	0s
	2h 47m 0s

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