Support Python 3.12 and test in CI #3024

Job	Run time
pyright	39s
test (python=3.8 biopython=1.80)	33s
check-docs	37s
test (python=3.8 biopython=latest)	22s
mypy	50s
test (python=3.9 biopython=1.80)	34s
pathogen-repo-ci (dengue)	2m 39s
test (python=3.9 biopython=latest)	34s
pathogen-repo-ci (lassa)	46s
pathogen-repo-ci-v0 (avian-flu)	51s
test (python=3.10 biopython=1.80)	22s
pathogen-repo-ci (measles)	1m 33s
pathogen-repo-ci-v0 (ebola)	1m 0s
test (python=3.10 biopython=latest)	36s
pathogen-repo-ci (mpox)	1m 26s
test (python=3.11 biopython=1.80)	35s
pathogen-repo-ci-v0 (mumps)	53s
pathogen-repo-ci (seasonal-cov)	2m 7s
pathogen-repo-ci-v0 (ncov)	56s
pathogen-repo-ci (zika)	1m 9s
test (python=3.11 biopython=latest)	36s
pathogen-repo-ci-v0 (rsv)	8m 13s
test (python=3.12 biopython=1.80)	19s
pathogen-repo-ci-v0 (seasonal-flu)	1m 8s
test (python=3.12 biopython=latest)	34s
pathogen-repo-ci-v0 (tb)	1m 18s
build-docs / build	2m 28s
codecov	0s
release	0s
rebuild-docker-image	0s
	33m 38s

Provide feedback