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v1.2.12 | ||
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* Clear up a deprecation warning: https://github.com/nanoporetech/fast5_research/issues/30 | ||
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v1.2.11 | ||
* Add `filter_reads` program to extract a subset of reads from multi-reads. | ||
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v1.2.10 | ||
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* Minor syntax fix in `extract.py` for python2 | ||
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v1.2.9 | ||
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* Add basic support for creation of multi-read files from bulk files. | ||
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v1.2.8 | ||
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* Small refactor of writing of mapping data. | ||
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v1.2.6 | ||
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* Fix slow creation of mapping table | ||
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v1.2.5 | ||
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* Ensure event structures containing text data are returned as strings rather than bytes under python3. | ||
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v1.2.3 | ||
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* Fixes issue with numpy 1.15 on reading type of views of structured data. | ||
* Updated documentation (https://nanoporetech.github.io/fast5_research/) | ||
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v1.2.2 | ||
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* Conversion from bulk to reads. | ||
* Require numpy >= 1.14. | ||
* A bit more python3 bytes cleaning. | ||
* Enforce types in raw, and required tracking_id attributes. | ||
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v1.1.0 | ||
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* Python3 compatibility changes | ||
* Add data cleaning steps for stringly types | ||
* Unpin numpy version | ||
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v1.0.12 | ||
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* Enforce some typing constraints on meta data for compatibility with some basecallers. | ||
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v1.0.11 | ||
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* Ignore h5py warnings on import | ||
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v1.0.10 | ||
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* Fix bug finding attributes when EventDetection not present | ||
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v1.0.8 | ||
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* Easy import of core classes and functions: | ||
`from fast5_research import Fast5, BulkFast5, iterate_fast5` | ||
* Enable recursive (lazy) search in `iterate_fast5`. | ||
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v1.0.9 | ||
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* Fix itertools import | ||
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v1.0.6 | ||
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* Ensure returned events have same dtype | ||
* fast5.py: all returned event arrays same dtype by passing them through self._get_read_data() | ||
* requirements: use any version of numpy | ||
* bump version to 1.0.6 |
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__version__ = '1.2.12' | ||
__version__ = '1.2.13' | ||
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from fast5_research.fast5 import Fast5, iterate_fast5 | ||
from fast5_research.fast5_bulk import BulkFast5 |