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Add changelog and bump version
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cjw85 committed Feb 28, 2019
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76 changes: 76 additions & 0 deletions CHANGELOG.md
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v1.2.12
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* Clear up a deprecation warning: https://github.com/nanoporetech/fast5_research/issues/30


v1.2.11
* Add `filter_reads` program to extract a subset of reads from multi-reads.


v1.2.10
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* Minor syntax fix in `extract.py` for python2

v1.2.9
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* Add basic support for creation of multi-read files from bulk files.

v1.2.8
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* Small refactor of writing of mapping data.

v1.2.6
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* Fix slow creation of mapping table

v1.2.5
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* Ensure event structures containing text data are returned as strings rather than bytes under python3.

v1.2.3
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* Fixes issue with numpy 1.15 on reading type of views of structured data.
* Updated documentation (https://nanoporetech.github.io/fast5_research/)

v1.2.2
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* Conversion from bulk to reads.
* Require numpy >= 1.14.
* A bit more python3 bytes cleaning.
* Enforce types in raw, and required tracking_id attributes.

v1.1.0
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* Python3 compatibility changes
* Add data cleaning steps for stringly types
* Unpin numpy version

v1.0.12
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* Enforce some typing constraints on meta data for compatibility with some basecallers.

v1.0.11
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* Ignore h5py warnings on import

v1.0.10
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* Fix bug finding attributes when EventDetection not present

v1.0.8
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* Easy import of core classes and functions:
`from fast5_research import Fast5, BulkFast5, iterate_fast5`
* Enable recursive (lazy) search in `iterate_fast5`.

v1.0.9
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* Fix itertools import

v1.0.6
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* Ensure returned events have same dtype
* fast5.py: all returned event arrays same dtype by passing them through self._get_read_data()
* requirements: use any version of numpy
* bump version to 1.0.6
2 changes: 1 addition & 1 deletion fast5_research/__init__.py
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__version__ = '1.2.12'
__version__ = '1.2.13'

from fast5_research.fast5 import Fast5, iterate_fast5
from fast5_research.fast5_bulk import BulkFast5

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