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This repository has been archived by the owner on Mar 23, 2023. It is now read-only.

Issues: nanoporetech/Pore-C-Snakemake

30 Open 17 Closed
30 Open 17 Closed
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Issues list

Output files
#52 opened Mar 20, 2023 by Oksanak22
Issue with the concertation .bam files to .bedpe
#50 opened Feb 7, 2023 by Oksanak22
Pandas error: Exception("name 'direct_long_range' is not defined")
#49 opened Dec 26, 2022 by vmurigneu
numpy attribute error
#48 opened Dec 21, 2022 by ulloaa
8
BWA-SW parameters.
#46 opened Nov 21, 2022 by Oksanak22
Error in rule add_refgenome
#45 opened Oct 26, 2022 by rb520826
Missing output files
#44 opened Oct 20, 2022 by Oksanak22
Execute the workflow
#43 opened Oct 17, 2022 by Oksanak22
Phased_vcfs.tsv
#42 opened Oct 7, 2022 by Oksanak22
Possible Pyarrow Bug
#41 opened Sep 29, 2022 by wenluo711
4
what configurations do I need to change?
#40 opened Sep 26, 2022 by mfazel
5
create_hic sun.reflect.Reflection.getCallerClass
#39 opened Aug 9, 2022 by OZTaekOppa
Scaffolding not working
#38 opened Aug 8, 2022 by fergsc
Wrong installation Guide env name
#37 opened Jul 19, 2022 by stasys-hub
1
Documentation and config errors
#36 opened Jul 18, 2022 by stasys-hub
CreateCondaEnvironmentException upon invoking snakemake in pore-c-snakemake environment
#35 opened Jun 29, 2022 by gchchung
2
Error in rule haplotag
#32 opened Apr 25, 2022 by sadhanagaddam3
rule assign_fragments crashes due to pyarrow problem
#30 opened Jan 14, 2022 by Mittmich
1
Missing input files for rule all:
#29 opened Jan 13, 2022 by GeoMicroSoares
5
Error in rule virtual_digest
#28 opened Dec 2, 2021 by MichelMoser
1
error haplotag rule
#27 opened Jul 14, 2021 by eedhaene
pandas.core.computation.ops.UndefinedVariableError
#26 opened Jul 6, 2021 by sarah872
Paired_end
#25 opened Jul 6, 2021 by hung-th
cut off for short/long range cis contacts
#24 opened Jun 3, 2021 by Henrikkoe
Difference between direct vs. indirect contacts
#23 opened Apr 22, 2021 by jychoilab
1
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