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mortazavilab · Oct 9, 2024 · f8c80d3 · f8c80d3
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diff --git a/docs/doctrees/api.doctree b/docs/doctrees/api.doctree
diff --git a/docs/doctrees/cite.doctree b/docs/doctrees/cite.doctree
diff --git a/docs/doctrees/environment.pickle b/docs/doctrees/environment.pickle
diff --git a/docs/doctrees/index.doctree b/docs/doctrees/index.doctree
diff --git a/docs/doctrees/installation.doctree b/docs/doctrees/installation.doctree
diff --git a/docs/doctrees/suggested_reading.doctree b/docs/doctrees/suggested_reading.doctree
diff --git a/docs/doctrees/tutorials.doctree b/docs/doctrees/tutorials.doctree
diff --git a/docs/html/.buildinfo b/docs/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: e11aa638f9d74ae68bbf875fa493d8be
+config: ccccfd29fa4af66be770b65ab36bc9fc
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/html/_modules/PyWGCNA/comparison.html b/docs/html/_modules/PyWGCNA/comparison.html
diff --git a/docs/html/_modules/PyWGCNA/geneExp.html b/docs/html/_modules/PyWGCNA/geneExp.html
diff --git a/docs/html/_modules/PyWGCNA/utils.html b/docs/html/_modules/PyWGCNA/utils.html
diff --git a/docs/html/_modules/PyWGCNA/wgcna.html b/docs/html/_modules/PyWGCNA/wgcna.html
diff --git a/docs/html/_modules/index.html b/docs/html/_modules/index.html
@@ -0,0 +1,140 @@
+<!DOCTYPE html>
+
+<html lang="en" data-content_root="../">
+  <head>
+    <meta charset="utf-8" />
+    <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+    <title>Overview: module code &#8212; PyWGCNA  documentation</title>
+    <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=a746c00c" />
+    <link rel="stylesheet" type="text/css" href="../_static/bootstrap-sphinx.css?v=4468db6d" />
+    <link rel="stylesheet" type="text/css" href="../_static/graphviz.css?v=fd3f3429" />
+    <script src="../_static/documentation_options.js?v=5929fcd5"></script>
+    <script src="../_static/doctools.js?v=9a2dae69"></script>
+    <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
+    <link rel="index" title="Index" href="../genindex.html" />
+    <link rel="search" title="Search" href="../search.html" />
+<meta charset='utf-8'>
+<meta http-equiv='X-UA-Compatible' content='IE=edge,chrome=1'>
+<meta name='viewport' content='width=device-width, initial-scale=1.0, maximum-scale=1'>
+<meta name="apple-mobile-web-app-capable" content="yes">
+<script type="text/javascript" src="../_static/js/jquery-1.12.4.min.js"></script>
+<script type="text/javascript" src="../_static/js/jquery-fix.js"></script>
+<script type="text/javascript" src="../_static/bootstrap-3.4.1/js/bootstrap.min.js"></script>
+<script type="text/javascript" src="../_static/bootstrap-sphinx.js"></script>
+
+  </head><body>
+
+  <div id="navbar" class="navbar navbar-default navbar-fixed-top">
+    <div class="container">
+      <div class="navbar-header">
+        <!-- .btn-navbar is used as the toggle for collapsed navbar content -->
+        <button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".nav-collapse">
+          <span class="icon-bar"></span>
+          <span class="icon-bar"></span>
+          <span class="icon-bar"></span>
+        </button>
+        <a class="navbar-brand" href="../index.html">
+          PyWGCNA</a>
+        <span class="navbar-text navbar-version pull-left"><b></b></span>
+      </div>
+
+        <div class="collapse navbar-collapse nav-collapse">
+          <ul class="nav navbar-nav">
+
+
+              <li class="dropdown globaltoc-container">
+  <a role="button"
+     id="dLabelGlobalToc"
+     data-toggle="dropdown"
+     data-target="#"
+     href="../index.html">Site <b class="caret"></b></a>
+  <ul class="dropdown-menu globaltoc"
+      role="menu"
+      aria-labelledby="dLabelGlobalToc"><ul>
+<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../tutorials.html">Tutorials</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../suggested_reading.html">Suggested Reading</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../cite.html">Citation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../api.html">API Documentation</a></li>
+</ul>
+</ul>
+</li>
+
+                <li class="dropdown">
+  <a role="button"
+     id="dLabelLocalToc"
+     data-toggle="dropdown"
+     data-target="#"
+     href="#">Page <b class="caret"></b></a>
+  <ul class="dropdown-menu localtoc"
+      role="menu"
+      aria-labelledby="dLabelLocalToc"></ul>
+</li>
+
+
+
+
+
+
+
+
+
+
+              <li class="hidden-sm"></li>
+
+          </ul>
+
+
+
+<form class="navbar-form navbar-right" action="../search.html" method="get">
+ <div class="form-group">
+  <input type="text" name="q" class="form-control" placeholder="Search" />
+ </div>
+  <input type="hidden" name="check_keywords" value="yes" />
+  <input type="hidden" name="area" value="default" />
+</form>
+
+        </div>
+    </div>
+  </div>
+
+<div class="container">
+  <div class="row">
+      <div class="col-md-3">
+        <div id="sidebar" class="bs-sidenav" role="complementary">
+<form action="../search.html" method="get">
+ <div class="form-group">
+  <input type="text" name="q" class="form-control" placeholder="Search" />
+ </div>
+  <input type="hidden" name="check_keywords" value="yes" />
+  <input type="hidden" name="area" value="default" />
+</form>
+        </div>
+      </div>
+    <div class="body col-md-9 content" role="main">
+
+  <h1>All modules for which code is available</h1>
+<ul><li><a href="PyWGCNA/comparison.html">PyWGCNA.comparison</a></li>
+<li><a href="PyWGCNA/geneExp.html">PyWGCNA.geneExp</a></li>
+<li><a href="PyWGCNA/utils.html">PyWGCNA.utils</a></li>
+<li><a href="PyWGCNA/wgcna.html">PyWGCNA.wgcna</a></li>
+</ul>
+
+    </div>
+
+  </div>
+</div>
+<footer class="footer">
+  <div class="container">
+    <p class="pull-right">
+      <a href="#">Back to top</a>
+
+    </p>
+    <p>
+        &copy; Copyright 2022, Narges Rezaie.<br/>
+      Created using <a href="http://sphinx-doc.org/">Sphinx</a> 8.0.2.<br/>
+    </p>
+  </div>
+</footer>
+  </body>
+</html>
diff --git a/docs/html/_static/basic.css b/docs/html/_static/basic.css
@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- basic theme.
  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */
@@ -237,6 +237,10 @@ a.headerlink {
     visibility: hidden;
 }
 
+a:visited {
+    color: #551A8B;
+}
+
 h1:hover > a.headerlink,
 h2:hover > a.headerlink,
 h3:hover > a.headerlink,

diff --git a/docs/html/_static/doctools.js b/docs/html/_static/doctools.js
@@ -4,7 +4,7 @@
  *
  * Base JavaScript utilities for all Sphinx HTML documentation.
  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
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diff --git a/docs/html/_static/documentation_options.js b/docs/html/_static/documentation_options.js
@@ -1,5 +1,4 @@
-var DOCUMENTATION_OPTIONS = {
-    URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
+const DOCUMENTATION_OPTIONS = {
     VERSION: '',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,

diff --git a/docs/html/_static/graphviz.css b/docs/html/_static/graphviz.css
@@ -4,7 +4,7 @@
  *
  * Sphinx stylesheet -- graphviz extension.
  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
  * :license: BSD, see LICENSE for details.
  *
  */

diff --git a/docs/html/_static/language_data.js b/docs/html/_static/language_data.js
@@ -5,15 +5,15 @@
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  *
- * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS.
+ * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS.
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-/* Non-minified version is copied as a separate JS file, is available */
+/* Non-minified version is copied as a separate JS file, if available */
 
 /**
  * Porter Stemmer