update module_trait_relationships_heatmap

mortazavilab · Feb 8, 2024 · 4274533 · 4274533
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diff --git a/PyWGCNA/requirements.txt b/PyWGCNA/requirements.txt
@@ -0,0 +1,15 @@
+anndata==0.10.5.post1
+biomart==0.9.2
+gseapy==1.0.5
+matplotlib==3.8.2
+networkx==3.2.1
+numpy==1.24.4
+pandas==2.2.0
+pyvis==0.3.1
+reactome2py==3.0.0
+requests==2.28.1
+rsrc==0.1.3
+scikit_learn==1.4.0
+scipy==1.12.0
+seaborn==0.11.2
+statsmodels==0.14.1
diff --git a/README.md b/README.md
@@ -37,6 +37,7 @@ To install the most recent release, run
 - [Functional enrichment analysis ](tutorials/functional_enrichment_analysis.ipynb): How to perform functional enrichment analysis using databases such as GO, KEGG, and REACTOME in PyWGCNA object
 - [Visualize modules as network](tutorials/network_analysis.ipynb): How to visualize PyWGCNA objects as a network
 - [Recover Protein-Protein Interaction](tutorials/protein_protein_interaction.ipynb): How to find and plot PPI using STRING database.
+- [module trait relationships heatmap](tutorials/module_trait_relationships_heatmap.ipynb): How to calculate correlation between modules and traits
 
 ## Suggested Reading
 

diff --git a/tutorials/module_trait_relationships_heatmap.ipynb b/tutorials/module_trait_relationships_heatmap.ipynb