This repository has been archived by the owner on Jul 29, 2023. It is now read-only.
This is a mostly backward-compatible release of microDL that depends on TensorFlow 1.13 and Keras 2.1.6. Future releases will be based on PyTorch.
The release 1.0.0 provides:
- Comprehensive documentation of how to use the current pipeline. We describe the data format, CLI, and config files. We include example config files for preprocessing, training, and inference steps for virtual staining of label-free microscopy data using 2D U-Net and 2.5D U-Net models.
- Updated tutorial notebook originally used at the DL@MBL course 2022