Skip to content

Issues: maxplanck-ie/snakepipes

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

45 Open 431 Closed
45 Open 431 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

pairtools - multiqc enhancements
#1081 opened Nov 15, 2024 by WardDeb
@WardDeb
force compression of multiqc_data enhancement question
#1079 opened Nov 9, 2024 by thomasmanke
@WardDeb
three-prime-seq replace "shell" with "script" directive bug RNA-seq
#1078 opened Nov 8, 2024 by katsikora
proper envs - conda versions
#1077 opened Nov 7, 2024 by WardDeb
salmonIndex seq name from genes_bed2fasta
#1076 opened Oct 29, 2024 by hanrong498
validateFQ
#1075 opened Oct 28, 2024 by hanrong498
1
rule histoneHMM_out_gz throws an error at workflow rerun in the same output folder bug ChIP-Seq
#1070 opened Oct 18, 2024 by katsikora
snakepipes - pypi installation/configuration
#1069 opened Oct 10, 2024 by WardDeb
@WardDeb
makePairs workflow cleanup
#1068 opened Oct 9, 2024 by WardDeb
5 tasks
Clean up global args
#1066 opened Oct 9, 2024 by WardDeb
scRNA - combine_loom
#1063 opened Sep 26, 2024 by WardDeb
version 3.0.0 fails to create environments (stops at the RNAseq)
#1062 opened Sep 26, 2024 by sunta3iouxos
5
default conda env in 3.0.0
#1061 opened Sep 25, 2024 by sunta3iouxos
4
add --keep-going back to snakemake command
#1058 opened Sep 20, 2024 by katsikora
bowtie --cutntag -X 700, ATAC-seq, maxfragment size
#1057 opened Sep 10, 2024 by sunta3iouxos
shift read correction for ATAC/Cut&Tag
#1056 opened Sep 10, 2024 by sunta3iouxos
feature request? pepatac ATAC-seq question
#1053 opened Sep 10, 2024 by sunta3iouxos
2
snakePipes 3.0.0 logging
#1051 opened Sep 6, 2024 by katsikora
5
conda-env create is using /tmp
#1049 opened Sep 6, 2024 by katsikora
7
Add ChIPQC ChIP-Seq enhancement
#1048 opened Sep 5, 2024 by katsikora
1
error while running the DNA-mapping
#1045 opened Sep 3, 2024 by sunta3iouxos
3
dependency issues wgbs
#1044 opened Sep 3, 2024 by sunta3iouxos
3
MACS2_peak_qc
#1025 opened Jul 30, 2024 by LeilyR
2
predictChIPDict for samples without input bug ChIP-Seq
#1024 opened Jul 30, 2024 by LeilyR
1
filter_reads in DNAmapping pipeline doesnt do the filtering bug DNA-mapping
#1023 opened Jul 26, 2024 by LeilyR
3
ProTip! Updated in the last three days: updated:>2024-11-13.