Source code release (v1.0)!

.gitignore

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+.cxx/
+
+*.iml
+.gradle
+.idea/
+
+.DS_Store
+/build
+/captures
+.externalNativeBuild
+
+*.apk
+*.ap_
+*.aab
+*.dex
+*.class
+bin/
+gen/
+out/
+.gradle/
+build/
+local.properties
+proguard/
+*.log
+.navigation/
+captures/
+
+.externalNativeBuild
+freeline.py
+freeline/
+freeline_project_description.json
+
+fastlane/report.xml
+fastlane/Preview.html
+fastlane/screenshots
+fastlane/test_output
+fastlane/readme.md
+
+vcs.xml
+
+lint/intermediates/
+lint/generated/
+lint/outputs/
+lint/tmp/
+
+keystore.properties
+release/

app/.gitignore

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+/build
+

app/build.gradle

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+apply plugin: 'com.android.application'
+
+android {
+    compileSdkVersion 28
+    ndkVersion "20.0.5594570"
+    defaultConfig {
+        applicationId "it.mibiolab.clapp"
+        minSdkVersion 23
+        targetSdkVersion 28
+        versionCode 1
+        versionName "1.0"
+        testInstrumentationRunner "android.support.test.runner.AndroidJUnitRunner"
+        externalNativeBuild {
+            cmake {
+                cppFlags "-fopenmp"
+                arguments "-DANDROID_STL=c++_shared"
+            }
+        }
+        ndk {
+            abiFilters 'arm64-v8a'/*, 'armeabi-v7a'*/
+            /*abiFilters 'x86'*/
+            abiFilters.clear()
+        }
+    }
+    buildTypes {
+        release {
+            minifyEnabled false
+            proguardFiles getDefaultProguardFile('proguard-android-optimize.txt'), 'proguard-rules.pro'
+        }
+    }
+    externalNativeBuild {
+        cmake {
+            version "3.10.2"
+            path "src/main/cpp/CMakeLists.txt"
+        }
+    }
+    splits {
+        abi {
+            // Enables building multiple APKs per ABI.
+            enable true
+
+            // By default all ABIs are included, so use reset() and include to specify that we only
+            // want APKs for x86 and x86_64.
+
+            // Resets the list of ABIs that Gradle should create APKs for to none.
+            reset()
+
+            // Specifies a list of ABIs that Gradle should create APKs for.
+            include 'arm64-v8a'/*, 'armeabi-v7a'*/
+
+            // Specifies that we do not want to also generate a universal APK that includes all ABIs.
+            universalApk false
+
+        }
+    }
+    compileOptions {
+        sourceCompatibility = 1.7
+        targetCompatibility = 1.7
+    }
+    buildToolsVersion = '28.0.3'
+}
+
+dependencies {
+    implementation fileTree(include: ['*.jar'], dir: 'libs')
+    implementation 'com.android.support:appcompat-v7:28.0.0'
+    implementation 'com.android.support.constraint:constraint-layout:1.1.3'
+    implementation 'com.android.support:cardview-v7:28.0.0'
+    implementation 'com.android.support:support-v4:28.0.0'
+    testImplementation 'junit:junit:4.12'
+    androidTestImplementation 'com.android.support.test:runner:1.0.2'
+    androidTestImplementation 'com.android.support.test.espresso:espresso-core:3.0.2'
+    implementation group: 'org.apache.commons', name: 'commons-math3', version: '3.6.1'
+
+    // https://mvnrepository.com/artifact/commons-io/commons-io
+    implementation group: 'commons-io', name: 'commons-io', version: '2.6'
+}
+
+clean.doFirst {
+    delete ".externalNativeBuild"
+}

app/proguard-rules.pro

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+# Add project specific ProGuard rules here.
+# You can control the set of applied configuration files using the
+# proguardFiles setting in build.gradle.
+#
+# For more details, see
+#   http://developer.android.com/guide/developing/tools/proguard.html
+
+# If your project uses WebView with JS, uncomment the following
+# and specify the fully qualified class name to the JavaScript interface
+# class:
+#-keepclassmembers class fqcn.of.javascript.interface.for.webview {
+#   public *;
+#}
+
+# Uncomment this to preserve the line number information for
+# debugging stack traces.
+#-keepattributes SourceFile,LineNumberTable
+
+# If you keep the line number information, uncomment this to
+# hide the original source file name.
+#-renamesourcefileattribute SourceFile

app/src/main/AndroidManifest.xml

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+<?xml version="1.0" encoding="utf-8"?>
+<manifest xmlns:android="http://schemas.android.com/apk/res/android"
+    package="it.mibiolab.clapp">
+
+    <uses-permission android:name="android.permission.CAMERA" />
+    <uses-permission android:name="android.permission.WRITE_EXTERNAL_STORAGE" />
+    <uses-permission android:name="android.permission.READ_EXTERNAL_STORAGE" />
+
+    <application
+        android:name="it.mibiolab.clapp.MyApplication"
+        android:allowBackup="false"
+        android:icon="@mipmap/ic_launcher"
+        android:label="@string/app_name"
+        android:roundIcon="@mipmap/ic_launcher_round"
+        android:supportsRtl="true"
+        android:theme="@style/AppTheme"
+        android:largeHeap="true">
+        <activity
+            android:name="it.mibiolab.clapp.ClassifyCamera"
+            android:screenOrientation="portrait"
+            android:theme="@style/Theme.AppCompat.Light.NoActionBar"
+            android:windowSoftInputMode="stateAlwaysHidden"></activity>
+        <activity android:name="it.mibiolab.clapp.PermissionActivity">
+            <intent-filter>
+                <action android:name="android.intent.action.MAIN" />
+
+                <category android:name="android.intent.category.LAUNCHER" />
+            </intent-filter>
+        </activity>
+    </application>
+
+</manifest>

app/src/main/cpp/CMakeLists.txt

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+cmake_minimum_required(VERSION 3.4.1)
+include(ExternalProject)
+
+set(CMAKE_PREFIX_PATH "${CMAKE_SOURCE_DIR}/libsroot/${ANDROID_ABI}/${CMAKE_BUILD_TYPE}" CACHE INTERNAL "Cmake prefix path" FORCE)
+set(CMAKE_FIND_ROOT_PATH "${CMAKE_PREFIX_PATH}" CACHE INTERNAL "Cmake find root path" FORCE)
+
+set(BUILD_SHARED_LIBS ON)
+
+set(LMDB_INCLUDE_DIR ${CMAKE_SOURCE_DIR}/lmdb/libraries/liblmdb)
+
+add_library( # Sets the name of the library.
+        native-lib
+
+        # Sets the library as a shared library.
+        SHARED)
+set(LMDB_LIBRARY lmdb)
+
+target_sources(native-lib
+        PUBLIC
+        # Provides a relative path to your source file(s).
+        native-lib.cpp
+        ${CMAKE_SOURCE_DIR}/lmdb/libraries/liblmdb/lmdb.h
+        ${CMAKE_SOURCE_DIR}/lmdb/libraries/liblmdb/mdb.c
+        ${CMAKE_SOURCE_DIR}/lmdb/libraries/liblmdb/midl.h
+        ${CMAKE_SOURCE_DIR}/lmdb/libraries/liblmdb/midl.c
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/include/cwr_app.h
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/src/cwr_app.cpp
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/include/cwr.h
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/src/cwr.cpp
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/include/visualization.h
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/src/visualization.cpp
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/include/train_utils.h
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/src/train_utils.cpp
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/include/model_status_reporter.h
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/src/model_status_reporter.cpp
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/include/rehearsal_memory.h
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/src/rehearsal_memory.cpp
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/include/training_status_reporter.h
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/include/myapp_training_reporter.h
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/src/myapp_training_reporter.cpp
+        ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/include/picosha2.h)
+
+#set(gflags_DIR ${CMAKE_SOURCE_DIR}/libsroot/${ANDROID_ABI}/${CMAKE_BUILD_TYPE}/lib/cmake/gflags)
+#set(glog_DIR ${CMAKE_SOURCE_DIR}/libsroot/${ANDROID_ABI}/${CMAKE_BUILD_TYPE}/lib/cmake/glog)
+#set(leveldb_DIR ${CMAKE_SOURCE_DIR}/libsroot/${ANDROID_ABI}/${CMAKE_BUILD_TYPE}/lib/cmake/leveldb)
+#set(Snappy_DIR ${CMAKE_SOURCE_DIR}/libsroot/${ANDROID_ABI}/${CMAKE_BUILD_TYPE}/lib/cmake/Snappy)
+# OpenCV install directory structure is strange and requires an explicit *_DIR set to the OpenCVConfig.cmake location
+set(OpenCV_DIR ${CMAKE_SOURCE_DIR}/libsroot/${ANDROID_ABI}/${CMAKE_BUILD_TYPE}/sdk/native/jni)
+#set(OpenBLAS_DIR ${CMAKE_SOURCE_DIR}/libsroot/${ANDROID_ABI}/${CMAKE_BUILD_TYPE}/share/cmake/OpenBLAS)
+#set(Caffe_DIR ${CMAKE_SOURCE_DIR}/libsroot/${ANDROID_ABI}/${CMAKE_BUILD_TYPE}/share/Caffe)
+find_package(gflags REQUIRED)
+find_package(glog REQUIRED)
+find_package(leveldb REQUIRED)
+find_package(Snappy REQUIRED)
+find_package(OpenCV REQUIRED)
+find_package(OpenBLAS REQUIRED)
+find_package(Caffe REQUIRED)
+find_package(Threads)
+find_package(Boost REQUIRED)
+
+file(GLOB allLibs "${CMAKE_SOURCE_DIR}/libsroot/${ANDROID_ABI}/${CMAKE_BUILD_TYPE}/**/*.so")
+
+# Copies shared libraries to output directory (so that they will be added to the final APK)
+foreach(lib_path ${allLibs})
+    add_custom_command(TARGET native-lib POST_BUILD
+        COMMAND ${CMAKE_COMMAND} -E copy ${lib_path} ${CMAKE_LIBRARY_OUTPUT_DIRECTORY})
+endforeach()
+
+find_library(log-lib log)
+
+target_include_directories(native-lib PUBLIC ${CMAKE_SOURCE_DIR}/native-lib/CwrApp/include ${LMDB_INCLUDE_DIR})
+target_link_libraries(
+       native-lib
+
+        ${log-lib}
+        Snappy::snappy
+        leveldb::leveldb
+        ${Boost_LIBRARIES}
+        glog::glog
+        gflags
+        OpenBLAS::OpenBLAS
+        ${OpenCV_LIBS}
+        caffe)

app/src/main/cpp/libsroot/arm64-v8a/Debug/LICENSE

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+By downloading, copying, installing or using the software you agree to this license.
+If you do not agree to this license, do not download, install,
+copy or use the software.
+
+
+                          License Agreement
+               For Open Source Computer Vision Library
+                       (3-clause BSD License)
+
+Copyright (C) 2000-2019, Intel Corporation, all rights reserved.
+Copyright (C) 2009-2011, Willow Garage Inc., all rights reserved.
+Copyright (C) 2009-2016, NVIDIA Corporation, all rights reserved.
+Copyright (C) 2010-2013, Advanced Micro Devices, Inc., all rights reserved.
+Copyright (C) 2015-2016, OpenCV Foundation, all rights reserved.
+Copyright (C) 2015-2016, Itseez Inc., all rights reserved.
+Third party copyrights are property of their respective owners.
+
+Redistribution and use in source and binary forms, with or without modification,
+are permitted provided that the following conditions are met:
+
+  * Redistributions of source code must retain the above copyright notice,
+    this list of conditions and the following disclaimer.
+
+  * Redistributions in binary form must reproduce the above copyright notice,
+    this list of conditions and the following disclaimer in the documentation
+    and/or other materials provided with the distribution.
+
+  * Neither the names of the copyright holders nor the names of the contributors
+    may be used to endorse or promote products derived from this software
+    without specific prior written permission.
+
+This software is provided by the copyright holders and contributors "as is" and
+any express or implied warranties, including, but not limited to, the implied
+warranties of merchantability and fitness for a particular purpose are disclaimed.
+In no event shall copyright holders or contributors be liable for any direct,
+indirect, incidental, special, exemplary, or consequential damages
+(including, but not limited to, procurement of substitute goods or services;
+loss of use, data, or profits; or business interruption) however caused
+and on any theory of liability, whether in contract, strict liability,
+or tort (including negligence or otherwise) arising in any way out of
+the use of this software, even if advised of the possibility of such damage.

app/src/main/cpp/libsroot/arm64-v8a/Debug/README.android

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+See http://opencv.org/platforms/android

app/src/main/cpp/libsroot/arm64-v8a/Debug/include/boost/accumulators/accumulators.hpp

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+///////////////////////////////////////////////////////////////////////////////
+/// \file accumulators.hpp
+/// Includes all of the Accumulators Framework
+//
+//  Copyright 2005 Eric Niebler. Distributed under the Boost
+//  Software License, Version 1.0. (See accompanying file
+//  LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
+
+#ifndef BOOST_ACCUMULATORS_ACCUMULATORS_HPP_EAN_28_10_2005
+#define BOOST_ACCUMULATORS_ACCUMULATORS_HPP_EAN_28_10_2005
+
+#include <boost/accumulators/framework/accumulator_set.hpp>
+#include <boost/accumulators/framework/accumulator_concept.hpp>
+#include <boost/accumulators/framework/accumulator_base.hpp>
+#include <boost/accumulators/framework/extractor.hpp>
+#include <boost/accumulators/framework/external.hpp>
+#include <boost/accumulators/framework/features.hpp>
+#include <boost/accumulators/framework/parameters/accumulator.hpp>
+#include <boost/accumulators/framework/parameters/sample.hpp>
+#include <boost/accumulators/framework/parameters/weight.hpp>
+#include <boost/accumulators/framework/parameters/weights.hpp>
+#include <boost/accumulators/framework/accumulators/external_accumulator.hpp>
+#include <boost/accumulators/framework/accumulators/droppable_accumulator.hpp>
+#include <boost/accumulators/framework/accumulators/reference_accumulator.hpp>
+#include <boost/accumulators/framework/accumulators/value_accumulator.hpp>
+
+#endif