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v2.3.0
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@alancleary alancleary released this 12 Jul 16:53
· 84 commits to main since this release
v2.3.0
0eb9e35

This release fixes some bugs, updates dependencies, and introduces a handful of new features. Notably, all files related to Docker Compose have been moved to a separate, independently versioned repository: legumeinfo/gcv-docker-compose.

Major features:

  • Default parameter values can now be set from the config file (see the Wiki for details)
  • Instructions page screenshots now support responsive image sizing and each image has a lightbox for closer inspection (see the Wiki for details)
  • A scale-screenshot command has been added to the NPM package CLI to allow admins to generate scaled copies of screenshots to support responsive sizing in production
  • "Advanced" chromosome genes and chromosome length parameters have been added to the macro-synteny parameters to allow users to only generate blocks for chromosomes that have a minimum number of genes and/or a minimum physical length (bp), respectively

Minor features:

  • The macro-synteny distance metric now uses multiset Jaccard instead of regular Jaccard
  • Distance is now the default macro-synteny ordering scheme used when one isn't specified
  • The Redis loader is now a service in the microservices Docker Compose files, though it is not automatically run with Docker Compose up
  • Multiple alignments no longer contain empty columns
  • The micro-synteny gene family legend now emits the names of the genes in a family via the broadcast channel when a family in the legend is hovered over
  • The togglable orphans gene family feature from v1 of GCV was reimplemented
  • The GCV path (base href) can now be set in Docker via the GCV_PATH environment variable in the production container

Bug fixes:

  • Updated the RediSearch heath check to prevent microservices from starting before the database is loaded
  • Automatic Redis snapshots are now disabled since our access pattern is write once, read many, which fixes a bulk loading bug
  • Added the node_modules/ directory as a volume in the development container
  • Changing the micro-synteny search parameters now actually triggers a new search instead of just clearing the view
  • Resizing a viewer's container no longer resets the container's scroll position
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