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39 Open 184 Closed
39 Open 184 Closed
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Issues list

LongReads: QC cutoffs
#308 opened Nov 7, 2024 by leonschuetz
1 task
LongReads: improve file checks in pipeline
#303 opened Oct 14, 2024 by leonschuetz
4 of 6 tasks
LongReads: create validation for different dorado versions
#301 opened Oct 10, 2024 by leonschuetz
1 of 4 tasks
LongReads: Implement Methylartist
#298 opened Oct 7, 2024 by leonschuetz
3
Annotation problem
#295 opened Sep 26, 2024 by allatarr
6
LongRead: Integrate Paraphase
#291 opened Sep 12, 2024 by leonschuetz
3 tasks
Add documentation page for long-read trio/multi sample analysis
#290 opened Aug 28, 2024 by marc-sturm
@leonschuetz
Unable to run the trio_longread.php pipeline question
#288 opened Aug 27, 2024 by noob9721
@marc-sturm
3
Refactor copy_sample.php
#287 opened Aug 22, 2024 by leonschuetz
2 tasks
test gVCF merging on Dragen 4.3
#286 opened Aug 21, 2024 by marc-sturm
2 tasks
@marc-sturm
Containerize all tools used by megSAP
#282 opened Aug 14, 2024 by leonschuetz
50 of 53 tasks
@leonschuetz @KilianIlius
LongRead: adjust RohHunter for LongReads
#281 opened Aug 14, 2024 by leonschuetz
3 tasks
LongRead: Import for lrGS run QC
#280 opened Jul 29, 2024 by leonschuetz
3 of 4 tasks
LongReads: Check for common variants in SR pseudogenes
#279 opened Jul 29, 2024 by leonschuetz
2 tasks
1
LongReads: Test Clair3-Nova
#278 opened Jul 22, 2024 by leonschuetz
Getting problem when I type "./download_dbs.sh"
#266 opened May 9, 2024 by ThomasYang0615
2
LongReads: Create low-confident region
#263 opened Apr 22, 2024 by leonschuetz
NovaSeqX: mapping of cfDNA and RNA
#254 opened Mar 20, 2024 by leonschuetz
5 tasks
Check EGFR variant not getting called
#249 opened Feb 22, 2024 by Ott-Alexander
5 tasks done
1
LongReads: remove unmapped bams
#247 opened Feb 8, 2024 by leonschuetz
6 of 8 tasks
5
Replace RNA expression analysis by DROP pipeline
#235 opened Dec 7, 2023 by marc-sturm
@marc-sturm
Test targeted callers with DRAGEN
#227 opened Oct 23, 2023 by marc-sturm
@marc-sturm
Test validation datasets
#224 opened Oct 11, 2023 by marc-sturm
1
Test high-sensitivity mode on Dragen (mosaic)
#216 opened Aug 31, 2023 by marc-sturm
2 tasks
@marc-sturm
1
RNA annotation Indels
#215 opened Aug 30, 2023 by Ott-Alexander
1 of 10 tasks
ProTip! Exclude everything labeled bug with -label:bug.