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1. blab/flu-forecasting blab/flu-forecasting Public

   Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution

   Jupyter Notebook 5 1

2. blab/popcast blab/popcast Public

   Long-term forecasts for pathogen populations

   Python 1

3. dms-view/dms-view.github.io dms-view/dms-view.github.io Public

   Interactive visualization of mutational antigenic profiling data

   JavaScript 9 6

4. nextstrain/augur nextstrain/augur Public

   Pipeline components for real-time phylodynamic analysis

   Python 268 128

5. nextstrain/ncov nextstrain/ncov Public

   Nextstrain build for novel coronavirus SARS-CoV-2

   Python 1.4k 403

6. nextstrain/seasonal-flu nextstrain/seasonal-flu Public

   Scripts. config, and snakefiles for seasonal-flu nextstrain builds

   Python 45 26