Merge pull request #519 from livaage/timing_studies

Accelerating and testing point cloud building

.github/workflows/test.yaml

@@ -38,7 +38,4 @@ jobs:
       - name: Test with pytest
         run: |
           pytest
-      - name: Explicitly convert coverage to xml
-        run: coverage xml
-      - name: Upload coverage report
-        uses: codecov/[email protected]
+

environments/default.yml

@@ -15,7 +15,7 @@ dependencies:
   - pytorch-cluster
   - optuna
   - wandb
-  - numpy
+  - numpy < 2
   - pandas
   - scikit-learn
   - pip

environments/macos.yml

@@ -10,7 +10,7 @@ dependencies:
   - pytorch >= 2
   - optuna
   - wandb
-  - numpy
+  - numpy < 2
   - pandas
   - scikit-learn
   - pip

environments/minimal.yml

@@ -10,7 +10,7 @@ dependencies:
   - pytorch >= 2
   - pyg >= 2.3.0
   - optuna
-  - numpy
+  - numpy < 2
   - pandas
   - scikit-learn
   - pip

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.pytest.ini_options]
 minversion = "6.0"
-addopts = ["--cov=gnn_tracking", "-ra", "--strict-markers", "--strict-config"]
+addopts = ["-ra", "--strict-markers", "--strict-config"]
 testpaths = [
     "tests"
 ]
@@ -14,7 +14,7 @@ all = true
 
 
 [tool.ruff]
-select = [
+lint.select = [
   "E", "F", "W", # flake8
   "B", "B904",   # flake8-bugbear
   "I",           # isort
@@ -39,7 +39,7 @@ select = [
   "NPY",         # NumPy specific rules
   "PD",          # pandas-vet
 ]
-extend-ignore = [
+lint.extend-ignore = [
   "PLR",    # Design related pylint codes
   "E501",   # Line too long
   "PT004",  # Use underscore for non-returning fixture (use usefixture instead)
@@ -50,9 +50,9 @@ extend-ignore = [
 ]
 target-version = "py37"
 src = ["src"]
-unfixable = [
+lint.unfixable = [
   "T20",  # Removes print statements
   "F841", # Removes unused variables
 ]
 exclude = []
-flake8-unused-arguments.ignore-variadic-names = true
+lint.flake8-unused-arguments.ignore-variadic-names = true