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alter the creation of the noiea version to something trivial, as the …
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…files are now the same (empty) and it seems to be tripping up for some reason; for geneontology/pipeline#382
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kltm committed Aug 11, 2024
1 parent 412ee8c commit 03fccde
Showing 1 changed file with 7 additions and 6 deletions.
13 changes: 7 additions & 6 deletions pipeline/Makefile
Original file line number Diff line number Diff line change
Expand Up @@ -112,13 +112,14 @@ SUPPRESS_THESE_TAGS = $(foreach tag,$(GORULE_TAGS_TO_SUPPRESS),--suppress-rule-r

GOA_UNIPROT_ALL = target/groups/goa/goa_uniprot_all_noiea.gpi target/groups/goa/goa_uniprot_all_noiea.gpad target/groups/goa/goa_uniprot_all_noiea_cam.ttl

# target/groups/goa/goa_uniprot_all.gaf.gz
# gzip -dcf target/groups/goa/goa_uniprot_all-src.gaf.gz | ./util/goa_filter -v report=target/groups/goa/goa_uniprot_all_skipped.report -v noiea=target/groups/goa/goa_uniprot_all_noiea.gaf > target/groups/goa/goa_uniprot_all.gaf.tmp
# mv target/groups/goa/goa_uniprot_all.gaf.tmp target/groups/goa/goa_uniprot_all.gaf
# gzip -cf target/groups/goa/goa_uniprot_all.gaf > target/groups/goa/goa_uniprot_all.gaf.gz
# gzip -cf target/groups/goa/goa_uniprot_all_noiea.gaf > target/groups/goa/goa_uniprot_all_noiea.gaf.gz
# rm -f target/groups/goa/goa_uniprot_all-src.gaf target/groups/goa/goa_uniprot_all.gaf || true
target/groups/goa/goa_uniprot_all_noiea.gaf: target/alltaxons.txt target/groups/goa/goa_uniprot_all-src.gaf.gz
gzip -dcf target/groups/goa/goa_uniprot_all-src.gaf.gz | ./util/goa_filter -v report=target/groups/goa/goa_uniprot_all_skipped.report -v noiea=target/groups/goa/goa_uniprot_all_noiea.gaf > target/groups/goa/goa_uniprot_all.gaf.tmp
mv target/groups/goa/goa_uniprot_all.gaf.tmp target/groups/goa/goa_uniprot_all.gaf
gzip -cf target/groups/goa/goa_uniprot_all.gaf > target/groups/goa/goa_uniprot_all.gaf.gz
gzip -cf target/groups/goa/goa_uniprot_all_noiea.gaf > target/groups/goa/goa_uniprot_all_noiea.gaf.gz
rm -f target/groups/goa/goa_uniprot_all-src.gaf target/groups/goa/goa_uniprot_all.gaf || true
cp target/groups/goa/goa_uniprot_all-src.gaf.gz target/groups/goa/goa_uniprot_all.gaf.gz
cp target/groups/goa/goa_uniprot_all-src.gaf.gz target/groups/goa/goa_uniprot_all_noiea.gaf.gz

RDF_GEN = rdfgen.py
target/groups/goa/goa_uniprot_all_noiea_cam.ttl: target/go-ontology.json target/groups/goa/goa_uniprot_all_noiea.gaf
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