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  1. Bash_scripts Bash_scripts Public

    Custom Bash Shell scripts for use with AntiSMASH and Biosynthetic MetaSpades data outputs (fasta/GenBank). Scripts carry out file management, data parsing and data QC

    Shell

  2. groupnextflow groupnextflow Public

    Hi-C Nextflow script and Singularity container for a collaborative group MSc project.

    Nextflow 1

  3. Nextflow_AntiSMASH Nextflow_AntiSMASH Public

    Custom Nextflow scripts for microbiome assembly and AntiSMASH BGC analyses. Based around microbiome assemblers: Megahit & MetaSpades

    Nextflow

  4. Python_GC_distribution_Script Python_GC_distribution_Script Public

    Python script for taking in Genbank accession codes for organsims genomes and runs an analsyis to determine if there is a link between gene length distibutions and the size of the organisms genomes

    Jupyter Notebook

  5. R_shiny R_shiny Public

    R-shiny app for processing differential gene expression data

    R

  6. thesisreal thesisreal Public

    My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.

    Jupyter Notebook