JDBetteridge/merge pyop2 tsfc #1
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name: CI | |
# Trigger the workflow on push or pull request, | |
# but only for the master branch | |
on: | |
push: | |
branches: | |
- master | |
pull_request: | |
branches: | |
- master | |
jobs: | |
test: | |
runs-on: ubuntu-latest | |
strategy: | |
# Don't immediately kill all if one Python version fails | |
fail-fast: false | |
matrix: | |
python-version: ['3.9', '3.10', '3.11', '3.12'] | |
env: | |
CC: mpicc | |
PETSC_DIR: ${{ github.workspace }}/petsc | |
PETSC_ARCH: default | |
PETSC_CONFIGURE_OPTIONS: --with-debugging=1 --with-shared-libraries=1 --with-c2html=0 --with-fortran-bindings=0 | |
RDMAV_FORK_SAFE: 1 | |
PYOP2_CI_TESTS: 1 | |
timeout-minutes: 60 | |
steps: | |
- name: Install system dependencies | |
shell: bash | |
run: | | |
sudo apt update | |
sudo apt install build-essential mpich libmpich-dev \ | |
libblas-dev liblapack-dev gfortran | |
- name: Set correct Python version | |
uses: actions/setup-python@v2 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Clone PETSc | |
uses: actions/checkout@v2 | |
with: | |
repository: firedrakeproject/petsc | |
path: ${{ env.PETSC_DIR }} | |
- name: Build and install PETSc | |
shell: bash | |
working-directory: ${{ env.PETSC_DIR }} | |
run: | | |
./configure ${PETSC_CONFIGURE_OPTIONS} | |
make | |
- name: Build and install petsc4py | |
shell: bash | |
working-directory: ${{ env.PETSC_DIR }}/src/binding/petsc4py | |
run: | | |
python -m pip install --upgrade pip | |
python -m pip install --upgrade wheel cython numpy | |
python -m pip install --no-deps . | |
- name: Checkout PyOP2 | |
uses: actions/checkout@v2 | |
with: | |
path: PyOP2 | |
- name: Install PyOP2 dependencies | |
shell: bash | |
working-directory: PyOP2 | |
run: | | |
# xargs is used to force installation of requirements in the order we specified. | |
xargs -l1 python -m pip install < requirements-ext.txt | |
xargs -l1 python -m pip install < requirements-git.txt | |
python -m pip install pulp | |
python -m pip install -U flake8 | |
python -m pip install -U pytest-timeout | |
- name: Install PyOP2 (Python <3.12) | |
if: ${{ matrix.python-version != '3.12' }} | |
shell: bash | |
working-directory: PyOP2 | |
run: python -m pip install . | |
# Not sure if this is a bug in setuptools or something PyOP2 is doing wrong | |
- name: Install PyOP2 (Python == 3.12) | |
if: ${{ matrix.python-version == '3.12' }} | |
shell: bash | |
working-directory: PyOP2 | |
run: | | |
python -m pip install -U setuptools | |
python setup.py install | |
- name: Run linting | |
shell: bash | |
working-directory: PyOP2 | |
run: make lint | |
- name: Run tests | |
shell: bash | |
working-directory: PyOP2 | |
run: | | |
# Running parallel test cases separately works around a bug in pytest-mpi | |
pytest -k "not parallel" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v test | |
mpiexec -n 3 pytest -k "parallel[3]" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v test | |
timeout-minutes: 10 | |
- name: Build documentation | |
if: ${{ matrix.python-version == '3.10' }} | |
shell: bash | |
working-directory: PyOP2 | |
run: | | |
python -m pip install sphinx | |
make -C doc/sphinx html | |
- name: Upload to github pages | |
if: ${{ github.ref == 'refs/heads/master' && github.event_name == 'push' && matrix.python-version== '3.10' }} | |
uses: crazy-max/[email protected] | |
with: | |
build_dir: PyOP2/doc/sphinx/build/html | |
jekyll: false | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |