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JDBetteridge/merge pyop2 tsfc #1

JDBetteridge/merge pyop2 tsfc

JDBetteridge/merge pyop2 tsfc #1

Workflow file for this run

name: CI
# Trigger the workflow on push or pull request,
# but only for the master branch
on:
push:
branches:
- master
pull_request:
branches:
- master
jobs:
test:
runs-on: ubuntu-latest
strategy:
# Don't immediately kill all if one Python version fails
fail-fast: false
matrix:
python-version: ['3.9', '3.10', '3.11', '3.12']
env:
CC: mpicc
PETSC_DIR: ${{ github.workspace }}/petsc
PETSC_ARCH: default
PETSC_CONFIGURE_OPTIONS: --with-debugging=1 --with-shared-libraries=1 --with-c2html=0 --with-fortran-bindings=0
RDMAV_FORK_SAFE: 1
PYOP2_CI_TESTS: 1
timeout-minutes: 60
steps:
- name: Install system dependencies
shell: bash
run: |
sudo apt update
sudo apt install build-essential mpich libmpich-dev \
libblas-dev liblapack-dev gfortran
- name: Set correct Python version
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python-version }}
- name: Clone PETSc
uses: actions/checkout@v2
with:
repository: firedrakeproject/petsc
path: ${{ env.PETSC_DIR }}
- name: Build and install PETSc
shell: bash
working-directory: ${{ env.PETSC_DIR }}
run: |
./configure ${PETSC_CONFIGURE_OPTIONS}
make
- name: Build and install petsc4py
shell: bash
working-directory: ${{ env.PETSC_DIR }}/src/binding/petsc4py
run: |
python -m pip install --upgrade pip
python -m pip install --upgrade wheel cython numpy
python -m pip install --no-deps .
- name: Checkout PyOP2
uses: actions/checkout@v2
with:
path: PyOP2
- name: Install PyOP2 dependencies
shell: bash
working-directory: PyOP2
run: |
# xargs is used to force installation of requirements in the order we specified.
xargs -l1 python -m pip install < requirements-ext.txt
xargs -l1 python -m pip install < requirements-git.txt
python -m pip install pulp
python -m pip install -U flake8
python -m pip install -U pytest-timeout
- name: Install PyOP2 (Python <3.12)
if: ${{ matrix.python-version != '3.12' }}
shell: bash
working-directory: PyOP2
run: python -m pip install .
# Not sure if this is a bug in setuptools or something PyOP2 is doing wrong
- name: Install PyOP2 (Python == 3.12)
if: ${{ matrix.python-version == '3.12' }}
shell: bash
working-directory: PyOP2
run: |
python -m pip install -U setuptools
python setup.py install
- name: Run linting
shell: bash
working-directory: PyOP2
run: make lint
- name: Run tests
shell: bash
working-directory: PyOP2
run: |
# Running parallel test cases separately works around a bug in pytest-mpi
pytest -k "not parallel" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v test
mpiexec -n 3 pytest -k "parallel[3]" --tb=native --timeout=480 --timeout-method=thread -o faulthandler_timeout=540 -v test
timeout-minutes: 10
- name: Build documentation
if: ${{ matrix.python-version == '3.10' }}
shell: bash
working-directory: PyOP2
run: |
python -m pip install sphinx
make -C doc/sphinx html
- name: Upload to github pages
if: ${{ github.ref == 'refs/heads/master' && github.event_name == 'push' && matrix.python-version== '3.10' }}
uses: crazy-max/[email protected]
with:
build_dir: PyOP2/doc/sphinx/build/html
jekyll: false
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}