build: upgrade FOCA #38
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: proWES checks | |
| on: | |
| push: | |
| branches: [ dev ] | |
| pull_request: | |
| branches: [ dev ] | |
| jobs: | |
| lint: | |
| name: Run linting | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Install requirements | |
| run: | | |
| pip install . | |
| pip install -r requirements_dev.txt | |
| - name: Lint with Flake8 | |
| run: flake8 | |
| test: | |
| name: Run tests | |
| runs-on: ubuntu-latest | |
| env: | |
| PROBE_ENDPOINT: localhost:8080/ga4gh/wes/v1/service-info | |
| permissions: | |
| contents: read | |
| packages: write | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.10" | |
| - name: Deploy app | |
| run: docker compose up -d --build | |
| - name: Wait for app startup | |
| run: sleep 20 | |
| - run: docker ps | |
| - name: Probe endpoint | |
| run: | | |
| test $( \ | |
| curl \ | |
| -sL \ | |
| -v \ | |
| -o /dev/null \ | |
| -w '%{http_code}' \ | |
| -X GET \ | |
| --header 'Accept: application/json' \ | |
| "${PROBE_ENDPOINT}" \ | |
| ) == '200' || exit 1 | |
| publish: | |
| name: Build and publish app image | |
| runs-on: ubuntu-latest | |
| if: ${{ github.event_name == 'push' }} | |
| needs: [lint, test] | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Generate tag | |
| run: | | |
| echo "TAG=$(date '+%Y%m%d')" >> $GITHUB_ENV | |
| - name: Build and publish image | |
| id: docker | |
| uses: philips-software/[email protected] | |
| with: | |
| dockerfile: . | |
| image-name: "prowes" | |
| tags: "latest ${{ env.TAG }}" | |
| push-branches: "${{ github.event.repository.default_branch }}" | |
| env: | |
| REGISTRY_USERNAME: ${{ secrets.DOCKERHUB_LOGIN }} | |
| REGISTRY_TOKEN: "${{ secrets.DOCKERHUB_TOKEN }}" | |
| DOCKER_ORGANIZATION: ${{ secrets.DOCKERHUB_ORG }} | |
| GITHUB_ORGANIZATION: ${{ github.repository_owner }} | |
| - name: Verify that image was pushed | |
| run: | | |
| echo "Push indicator: ${{ steps.docker.outputs.push-indicator }}" | |
| echo "# Set to 'true' if image was pushed, empty string otherwise" | |
| test "${{ steps.docker.outputs.push-indicator }}" == "true" |