validate #2950
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| on: | |
| push: | |
| branches: | |
| - main | |
| - master | |
| - "r-*" | |
| pull_request: | |
| branches: | |
| - main | |
| - master | |
| - "r-*" | |
| schedule: | |
| - cron: '20 2 * * *' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }}-${{ github.head_ref || '' }}-${{ github.base_ref || '' }} | |
| cancel-in-progress: true | |
| name: validate | |
| jobs: | |
| db-tests: | |
| runs-on: ${{ matrix.config.os }}${{ matrix.config.os-version }} | |
| name: ${{ matrix.config.os }}${{ matrix.config.os-version }} (${{ matrix.config.r }}) ${{ matrix.config.desc }} | |
| # Begin custom: services | |
| # End custom: services | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: ubuntu-, os-version: 22.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" } | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| RSPM: ${{ matrix.config.rspm }} | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| # prevent rgl issues because no X11 display is available | |
| RGL_USE_NULL: true | |
| # Begin custom: env vars | |
| # End custom: env vars | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: ./.github/workflows/custom/before-install | |
| if: hashFiles('.github/workflows/custom/before-install/action.yml') != '' | |
| - uses: ./.github/workflows/install | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| install-r: false | |
| cache-version: rcc-smoke-1 | |
| needs: check | |
| extra-packages: any::rcmdcheck any::roxygen2 r-lib/styler | |
| - uses: ./.github/workflows/custom/after-install | |
| if: hashFiles('.github/workflows/custom/after-install/action.yml') != '' | |
| - name: Instrument R code for validation | |
| run: | | |
| if [ $(git status --porcelain | wc -l) -gt 0 ]; then | |
| echo "Fatal: git working copy not clean" | |
| fi | |
| sed -i -r '/INSTRUMENT: validate/ s/^( +)# /\1/g' R/* | |
| if [ $(git status --porcelain | wc -l) -eq 0 ]; then | |
| echo "Fatal: substitution did not change anything" | |
| fi | |
| - name: Run tests | |
| run: | | |
| testthat::test_local(reporter = testthat::ProgressReporter$new(max_failures = Inf, update_interval = Inf)) | |
| shell: Rscript {0} | |
| - name: Show test output | |
| if: always() | |
| run: | | |
| find check -name '*.Rout*' -exec head -n 1000000 '{}' \; || true | |
| shell: bash | |
| - name: Test coverage | |
| run: covr::codecov() | |
| shell: Rscript {0} |