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Rebuild for python312 #106

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regro-cf-autotick-bot
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This PR has been triggered in an effort to update python312.

Notes and instructions for merging this PR:

  1. Please merge the PR only after the tests have passed.
  2. Feel free to push to the bot's branch to update this PR if needed.

Please note that if you close this PR we presume that the feedstock has been rebuilt, so if you are going to perform the rebuild yourself don't close this PR until the your rebuild has been merged.


If this PR was opened in error or needs to be updated please add the bot-rerun label to this PR. The bot will close this PR and schedule another one. If you do not have permissions to add this label, you can use the phrase @conda-forge-admin, please rerun bot in a PR comment to have the conda-forge-admin add it for you.

This PR was created by the regro-cf-autotick-bot. The regro-cf-autotick-bot is a service to automatically track the dependency graph, migrate packages, and propose package version updates for conda-forge. Feel free to drop us a line if there are any issues! This PR was generated by https://github.com/regro/cf-scripts/actions/runs/6434149633, please use this URL for debugging.

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Hi! This is the friendly automated conda-forge-linting service.

I just wanted to let you know that I linted all conda-recipes in your PR (recipe) and found it was in an excellent condition.

@MilesCranmer
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@conda-forge-admin, please re-render

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Hi! This is the friendly automated conda-forge-webservice.

I tried to rerender for you, but it looks like there was nothing to do.

This message was generated by GitHub actions workflow run https://github.com/conda-forge/pysr-feedstock/actions/runs/6699559133.

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Hi! This is the friendly automated conda-forge-webservice.

I tried to rerender for you, but it looks like there was nothing to do.

This message was generated by GitHub actions workflow run https://github.com/conda-forge/pysr-feedstock/actions/runs/6699573666.

@MilesCranmer
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cc @mkitti @ngam looks like there might be a PyJulia+Conda compatibility issue on Python 3.12?

(1) The build seems to be failing for PySR: https://dev.azure.com/conda-forge/feedstock-builds/_build/results?buildId=798398&view=logs&j=c64f2b93-e1ef-5004-dedf-97174a8ceb90&t=814f9eff-bb55-598c-386c-5f64263478f1

Precompiling PyCall...
Precompiling PyCall... DONE
PyCall is installed and built successfully.
/home/conda/feedstock_root/build_artifacts/pysr_1698705842295/work/pysr/julia_helpers.py:208: UserWarning: Your system's Python library is static (e.g., conda), so precompilation will be turned off. For a dynamic library, try using `pyenv` and installing with `--enable-shared`: https://github.com/pyenv/pyenv/blob/master/plugins/python-build/README.md#building-with---enable-shared.
  warnings.warn(
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/home/conda/feedstock_root/build_artifacts/pysr_1698705842295/work/pysr/julia_helpers.py", line 98, in install
    Main, init_log = init_julia(julia_project, quiet=quiet, return_aux=True)
                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/conda/feedstock_root/build_artifacts/pysr_1698705842295/work/pysr/julia_helpers.py", line 216, in init_julia
    from julia import Main as _Main
ImportError: cannot import name 'Main' from 'julia' (/home/conda/feedstock_root/build_artifacts/pysr_1698705842295/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/python3.12/site-packages/julia/__init__.py)
Traceback (most recent call last):
  File "/opt/conda/bin/conda-mambabuild", line 10, in <module>
    sys.exit(main())
  File "/opt/conda/lib/python3.10/site-packages/boa/cli/mambabuild.py", line 256, in main
    call_conda_build(action, config)
  File "/opt/conda/lib/python3.10/site-packages/boa/cli/mambabuild.py", line 228, in call_conda_build
    result = api.build(
  File "/opt/conda/lib/python3.10/site-packages/conda_build/api.py", line 180, in build
    return build_tree(
  File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 3078, in build_tree
    packages_from_this = build(metadata, stats,
  File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2198, in build
    utils.check_call_env(cmd, env=env, rewrite_stdout_env=rewrite_env,
  File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 451, in check_call_env
    return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
  File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 427, in _func_defaulting_env_to_os_environ
    raise subprocess.CalledProcessError(proc.returncode, _args)
subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/home/conda/feedstock_root/build_artifacts/pysr_1698705842295/work/conda_build.sh']' returned non-zero exit status 1.
##[error]Bash exited with code '1'.
Finishing: Run docker build

(2) Also, some people have noted difficulties using PyJulia in conda for Python 3.12: MilesCranmer/PySR#448, which does not depend on this build. But @IlyaOrson mentioned it seemed seemed to work in a regular virtualenv which is curious.

So I wonder if there has been some change in conda for Python 3.12 builds that is messing up the PyJulia connection?

@mkitti
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mkitti commented Oct 30, 2023

Hmm... I'm guessing there is a common library causing issues.

@MilesCranmer
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MilesCranmer commented Oct 30, 2023

Is there a way we can force more information out of the following line?

ImportError: cannot import name 'Main' from 'julia' (/home/conda/feedstock_root/build_artifacts/pysr_1698705842295/.../lib/python3.12/site-packages/julia/__init__.py)

@IlyaOrson said he also saw this import error when trying to load other libraries, even though jl.eval() seemed to work fine if initialized manually.

Maybe the way from julia import Main works uses some deprecated feature on Python 3.12?

It could be caused by this: JuliaPy/pyjulia#509 which was a warning on 3.11, maybe now it is broken.

@MilesCranmer
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Okay I think I fixed it: JuliaPy/pyjulia#538

@regro-cf-autotick-bot
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I see that this PR has conflicts, and I'm the only committer. I'm going to close this PR and will make another one as appropriate. This was generated by https://github.com/regro/cf-scripts/actions/runs/7213772918

@regro-cf-autotick-bot regro-cf-autotick-bot deleted the rebuild-python312-0-1_h5b6cbc branch December 14, 2023 19:50
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3 participants