downgrade pyteomics version in pyproject.toml #133
Closed
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Use semi-colon instead of comma's in dependencies
* im2deep * models + debug * fix * add models * fixes in im2deep.py * fixes in im2deep.py * im2deep implementation * CCS shift calculation fix * models + plot * add unused argument * IM2Deep plot correct labels * calibrate per charge option * new models and reference * correct format reference * fix model name in IM2Deep * change use of reference dataset * IM2Deep calibrate correctly * Implement IM2Deep package * GUI changes im2deep * add im2deep to pyproject * change dockerfile * optimise spectrum parsing * update toml file * added debug logging * requested changes * change numpy version upper limit * fix bug * Use newer setup-python action; revert numpy upper limit * Fix numpy version for py311 * Update pyproject.toml Use semi-colon instead of comma's in dependencies * requested changes * Update ms2rescore/feature_generators/im2deep.py --------- Co-authored-by: rodvrees <[email protected]> Co-authored-by: rodvrees <[email protected]> Co-authored-by: rodvrees <[email protected]> Co-authored-by: RalfG <[email protected]>
…into timsRescore
To avoid pickle error in mutliprocessing with version 4.7.0 and higher of pyteomics, I put a limit on the versioning untill issue is fixed
|
Fixed upstream in psm_utils |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
To avoid pickle error in mutliprocessing with version 4.7.0 and higher of pyteomics, I put a limit on the versioning untill issue is fixed