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Refactor Commit Creation and Handling (#431)
* Refactor commit handling to allow for more agility. * Split out format-independent part of commit handling * Refactor commit handling allow more flexibility * Refactor commit generation to allow more flexibility * Disable expensive tests by default (ctest will still run them) * Finish consolidating and clean up * Clean up TranscriptHash API * Makefile cleanup * Update TranscriptHash to take bytes * clang-format * Fix transcript interop test * clang-tidy * clang-format
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