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@biomedicalinformaticsgroup

Biomedical Informatics Group

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  1. networks_ismb24 networks_ismb24 Public

    Jupyter Book for the Networks Tutorial at ISMB2024, Montreal, Canada.

    Jupyter Notebook 2 1

  2. MOGDx MOGDx Public

    R 1 1

  3. MOGDx-PPMI MOGDx-PPMI Public

    R 1

  4. MOGDxBook MOGDxBook Public

    Jupyter Notebook

  5. cadmus cadmus Public

    A full-text article retrieval pipeline for biomedical literature.

    Python 20 2

  6. ParallelPyMetaMap ParallelPyMetaMap Public

    This code is to run MetaMap in parallel using Python.

    Python 8

Repositories

Showing 10 of 27 repositories
  • cadmus Public

    A full-text article retrieval pipeline for biomedical literature.

    biomedicalinformaticsgroup/cadmus’s past year of commit activity
    Python 20 MIT 2 3 0 Updated Nov 4, 2024
  • biomedicalinformaticsgroup.github.io Public

    Biomedical Informatics Group @informatics, Edinburgh University

    biomedicalinformaticsgroup/biomedicalinformaticsgroup.github.io’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Sep 10, 2024
  • MOGDxBook Public
    biomedicalinformaticsgroup/MOGDxBook’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jul 22, 2024
  • networks_ismb24 Public

    Jupyter Book for the Networks Tutorial at ISMB2024, Montreal, Canada.

    biomedicalinformaticsgroup/networks_ismb24’s past year of commit activity
    Jupyter Notebook 2 1 1 0 Updated Jul 16, 2024
  • Sargasso Public

    Sargasso disambiguates mixed-species high-throughput sequencing data.

    biomedicalinformaticsgroup/Sargasso’s past year of commit activity
    Python 8 4 11 0 Updated Feb 6, 2024
  • MOGDx-PPMI Public
    biomedicalinformaticsgroup/MOGDx-PPMI’s past year of commit activity
    R 1 0 0 0 Updated Jan 21, 2024
  • MOGDx Public
    biomedicalinformaticsgroup/MOGDx’s past year of commit activity
    R 1 1 0 0 Updated Jan 21, 2024
  • ParallelPyMetaMap Public

    This code is to run MetaMap in parallel using Python.

    biomedicalinformaticsgroup/ParallelPyMetaMap’s past year of commit activity
    Python 8 MIT 0 2 0 Updated Jul 20, 2023
  • oa_pmc_extr Public

    This repository automatically requests and extracts Full Text from Open Access PMC.

    biomedicalinformaticsgroup/oa_pmc_extr’s past year of commit activity
    Python 1 MIT 0 1 0 Updated May 30, 2023
  • pm_abs_extr Public

    This repository automatically requests and extracts abstract from PubMed.

    biomedicalinformaticsgroup/pm_abs_extr’s past year of commit activity
    Python 1 MIT 0 1 0 Updated May 28, 2023
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