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Releases: bioinform/varsim

VarSim 0.8.6

26 Sep 17:21
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VarSim 0.8.5

23 Oct 17:52
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  • switches to using ./build.sh as preferred installation method
  • various bug fixes in parsing VCF, lift over BED based on MAP, etc.
  • added and refactored tests

VarSim 0.8.4

02 Feb 06:32
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  • new build.sh script
  • performance improvement
  • various fixes

VarSim 0.8.3

28 Mar 13:17
a72eaf6
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  • now use Real Time Genomics vcfeval for more sophisticated variant comparison where VarSim's builtin comparison fails. Try compare_vcf.py --help
  • added cutoff for SVLEN for differentiating small and large variants.
  • fix for restricted DGV sampling, dbSNP and more.

VarSim 0.8.2

01 Feb 03:30
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  • minor fixes

VarSim 0.8.1

07 Jul 17:57
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  • bug fixes for quickstart.sh, varsim.py, varsim_somatic.py and randvcfgenerator
  • support IMPRECISE length SV in vcfcompare

VarSim 0.8.0

13 Jun 15:11
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VarSim 0.8.0 Pre-release
Pre-release
  • Support for multi-sample validation and simulation
  • minor bug fixes (thanks to @hh1985)

VarSim 0.7.10

12 Jun 22:01
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VarSim 0.7.10 Pre-release
Pre-release
  • now supports multi-sample simulation and validation!
  • bug fixes

VarSim 0.7.9

09 May 22:27
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  • bug fix for SAMCompare (empty line in read map file)
  • added option for selecting samples when building restricted ref
  • fixed an issue associated with genomic coordinate liftover

VarSim 0.7.8

11 Apr 21:23
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  • bug fixes
  • add histogram for distance-based metrics