Releases: bioinform/varsim
Releases · bioinform/varsim
VarSim 0.8.6
VarSim 0.8.5
- switches to using
./build.sh
as preferred installation method - various bug fixes in parsing VCF, lift over BED based on MAP, etc.
- added and refactored tests
VarSim 0.8.4
- new
build.sh
script - performance improvement
- various fixes
VarSim 0.8.3
- now use Real Time Genomics
vcfeval
for more sophisticated variant comparison where VarSim's builtin comparison fails. Trycompare_vcf.py --help
- added cutoff for
SVLEN
for differentiating small and large variants. - fix for restricted DGV sampling, dbSNP and more.
VarSim 0.8.2
- minor fixes
VarSim 0.8.1
- bug fixes for
quickstart.sh
,varsim.py
,varsim_somatic.py
andrandvcfgenerator
- support
IMPRECISE
length SV invcfcompare
VarSim 0.8.0
- Support for multi-sample validation and simulation
- minor bug fixes (thanks to @hh1985)
VarSim 0.7.10
- now supports multi-sample simulation and validation!
- bug fixes
VarSim 0.7.9
- bug fix for
SAMCompare
(empty line in read map file) - added option for selecting samples when building restricted ref
- fixed an issue associated with genomic coordinate liftover
VarSim 0.7.8
- bug fixes
- add histogram for distance-based metrics